install.sh

#!/bin/bash
uv venv .venv --python 3.12
source .venv/bin/activate

echo "Installing snp2traitnet"
uv pip install -e snp2traitnet

echo "Installing emb2kg"
uv pip install -e emb2kg

echo "Installing litminer"
uv pip install -e litminer

echo "Installing genetviz"
uv pip install -e genetviz

mkdir -p snp2traitnet/Snp2TraitNet/output/snp2trait/checkpoints
curl -L "https://drive.usercontent.google.com/download?id=1nNcIpgAMjZ5J1bXiU1VOG7-EFSPgdQPs&confirm=xxx" -o snp2traitnet/Snp2TraitNet/output/snp2trait/checkpoints/snp2traitnet-checkpoint.ckpt
mkdir -p snp2traitnet/Snp2TraitNet/datasets
curl -L "https://drive.usercontent.google.com/download?id=1pckU0u7waU7oB9nEilOqB7vEfNxAbPRc&confirm=xxx" -o snp2traitnet/Snp2TraitNet/datasets/snp2trait.csv
mkdir -p genetviz/GENETViz/static/data/amd-analysis
curl -L "https://drive.usercontent.google.com/download?id=1IxG3ja0lTwk_eo4fNpRZbWaWSUS88V7z&confirm=xxx" -o genetviz/GENETViz/static/data/amd-analysis/graph_v4.json
curl -L "https://drive.usercontent.google.com/download?id=1dLsGOq-lmmarmsojD9ctWVaicrYktV5p&confirm=xxx" -o genetviz/GENETViz/static/data/amd-analysis/graph_entities_v4.csv
curl -L "https://drive.usercontent.google.com/download?id=1cmcsG-t2pPlOZIpZZpDgmNJ2DbEEwYsV&confirm=xxx" -o genetviz/GENETViz/static/data/amd-analysis/graph_relations_v4.csv