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330330At the current time, the user must calculate suitable values for ` B ` and ` H ` on
331331their own, and finding the best value for ` kc ` may require experimentation
332332(optimal values are typically in the range of 2-4). Internally, the Bloom filter
333- assembler divides the memory budget (` B ` ) equally across (` kc ` + 1) Bloom
334- filters, where ` kc ` Bloom filters are used for the cascading Bloom filter and
335- one additional Bloom filter is used to track k-mers that have previously been
336- included in contigs. Users are recommended to target a Bloom filter false
337- positive rate (FPR) that is less than 5%, as reported by the assembly log when
338- using the ` v=-v ` option (verbose level 1).
333+ assembler allocates the entire memory budget (` B ` ) to a Counting Bloom filter,
334+ and an additional (` B/8 ` ) memory to another Bloom filter that is used to track
335+ k-mers that have previously been included in contigs. Users are recommended to
336+ target a Bloom filter false positive rate (FPR) that is less than 5%, as reported
337+ by the assembly log when using the ` v=-v ` option (verbose level 1).
339338
340339Assembling using a paired de Bruijn graph
341340=========================================
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