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Package: anndataR
Title: AnnData interoperability in R
Version: 1.1.2
Authors@R: c(
person("Robrecht", "Cannoodt", , "rcannood@gmail.com", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")),
person("Luke", "Zappia", , "luke@lazappi.id.au", role = "aut",
comment = c(ORCID = "0000-0001-7744-8565", github = "lazappi")),
person("Martin", "Morgan", , "mtmorgan.bioc@gmail.com", role = "aut",
comment = c(ORCID = "0000-0002-5874-8148", github = "mtmorgan")),
person("Louise", "Deconinck", , "louise.deconinck@gmail.com", role = "aut",
comment = c(ORCID = "0000-0001-8100-6823", github = "LouiseDck")),
person("Danila", "Bredikhin", , "danila.bredikhin@embl.de", role = "ctb",
comment = c(ORCID = "0000-0001-8089-6983", github = "gtca")),
person("Isaac", "Virshup", role = "ctb",
comment = c(ORCID = "0000-0002-1710-8945", github = "ivirshup")),
person("Brian", "Schilder", , "brian_schilder@alumni.brown.edu", role = "ctb",
comment = c(ORCID = "0000-0001-5949-2191", github = "bschilder")),
person("Chananchida", "Sang-aram", role = "ctb",
comment = c(ORCID = "0000-0002-0922-0822", github = "csangara")),
person("Data Intuitive", , , "info@data-intuitive.com", role = "fnd"),
person("Chan Zuckerberg Initiative", role = "fnd"),
person("scverse consortium", role = "spn")
)
Description: Bring the power and flexibility of AnnData to the R
ecosystem, allowing you to effortlessly manipulate and analyse your
single-cell data. This package lets you work with backed h5ad and zarr
files, directly access various slots (e.g. X, obs, var), or convert
the data into SingleCellExperiment and Seurat objects.
License: MIT + file LICENSE
URL: https://anndataR.scverse.org/,
https://github.com/scverse/anndataR
BugReports: https://github.com/scverse/anndataR/issues
Depends:
R (>= 4.5.0)
Imports:
cli,
lifecycle,
Matrix,
methods,
purrr,
R6 (>= 2.4.0),
reticulate (>= 1.41.1),
rlang,
stats
Suggests:
BiocFileCache,
BiocStyle,
knitr,
processx,
rhdf5 (>= 2.52.1),
rmarkdown,
S4Vectors,
Seurat,
SeuratObject,
SingleCellExperiment,
spelling,
SummarizedExperiment,
testthat (>= 3.0.0),
vctrs,
withr,
yaml
VignetteBuilder:
knitr
biocViews: SingleCell, DataImport, DataRepresentation
Config/Needs/website: pkgdown, tibble, knitr, rprojroot, stringr, readr, purrr, dplyr, tidyr, rmarkdown
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE, r6 = TRUE)
RoxygenNote: 7.3.3
Language: en-GB