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Add release workflow and update CI for Apple Silicon
- Add release.yml workflow for automated PyPI publishing - Add Apple Silicon (macos-14) to CI workflow - Split macOS builds into Intel (macos-13) and ARM (macos-14) - Add comprehensive DEVELOPMENT.md with release instructions Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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‎.github/workflows/python-app.yml‎

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- name: Run tests (binary allele type)
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run: python ./test/run_tests.py binary -j2
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build-macos:
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runs-on: macos-latest
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build-macos-intel:
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runs-on: macos-13
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timeout-minutes: 90
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.10", "3.11", "3.12"]
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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cache: 'pip'
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- name: Install system dependencies
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run: |
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brew install swig libomp cmake ninja
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- name: Install Python dependencies
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run: |
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python -m pip install --upgrade pip
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pip install build scikit-build-core cmake ninja
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pip install -r requirements.txt
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- name: Build and install simuPOP
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env:
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OpenMP_ROOT: /usr/local/opt/libomp
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run: pip install -v .
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- name: Run tests (short allele type)
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run: python ./test/run_tests.py short -j2
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- name: Run tests (binary allele type)
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run: python ./test/run_tests.py binary -j2
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build-macos-arm:
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runs-on: macos-14
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timeout-minutes: 90
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strategy:
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fail-fast: false
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- name: Build and install simuPOP
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env:
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# Help CMake find libomp on macOS
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OpenMP_ROOT: /opt/homebrew/opt/libomp
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run: pip install -v .
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‎.github/workflows/release.yml‎

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# Release workflow: build wheels for all platforms and upload to PyPI
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#
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# Triggers:
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# - On GitHub release creation
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# - Manual dispatch (workflow_dispatch)
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#
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# To release:
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# 1. Update version in src/simuPOP/_version.py
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# 2. Create a GitHub release with a tag like "v1.1.18"
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# 3. This workflow will automatically build and upload to PyPI
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name: Release to PyPI
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on:
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release:
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types: [published]
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workflow_dispatch:
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inputs:
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upload_to_pypi:
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description: 'Upload to PyPI (true/false)'
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required: true
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default: 'false'
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type: choice
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options:
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- 'true'
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- 'false'
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permissions:
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contents: read
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jobs:
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# Build source distribution (only needs to run once)
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build-sdist:
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name: Build source distribution
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install build
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- name: Build sdist
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run: python -m build --sdist
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- name: Upload sdist artifact
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uses: actions/upload-artifact@v4
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with:
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name: sdist
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path: dist/*.tar.gz
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# Build wheels on Linux
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build-wheels-linux:
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name: Build wheels on Linux
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install cibuildwheel
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run: pip install cibuildwheel
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- name: Build wheels
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run: cibuildwheel --output-dir wheelhouse
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env:
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CIBW_BUILD: "cp39-manylinux_x86_64 cp310-manylinux_x86_64 cp311-manylinux_x86_64 cp312-manylinux_x86_64 cp313-manylinux_x86_64"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014
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CIBW_BEFORE_ALL_LINUX: yum install -y zlib-devel
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CIBW_BEFORE_BUILD: pip install scikit-build-core cmake ninja swig
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CIBW_TEST_COMMAND: python -c "import simuPOP; print(simuPOP.moduleInfo())"
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- name: Upload wheels
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uses: actions/upload-artifact@v4
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with:
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name: wheels-linux
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path: wheelhouse/*.whl
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# Build wheels on macOS (Intel)
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build-wheels-macos-intel:
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name: Build wheels on macOS (Intel)
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runs-on: macos-13
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install system dependencies
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run: brew install libomp
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- name: Install cibuildwheel
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run: pip install cibuildwheel
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- name: Build wheels
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run: cibuildwheel --output-dir wheelhouse
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env:
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CIBW_BUILD: "cp39-macosx_x86_64 cp310-macosx_x86_64 cp311-macosx_x86_64 cp312-macosx_x86_64 cp313-macosx_x86_64"
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CIBW_BEFORE_BUILD: pip install scikit-build-core cmake ninja swig
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CIBW_ENVIRONMENT: OpenMP_ROOT=/usr/local/opt/libomp
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CIBW_TEST_COMMAND: python -c "import simuPOP; print(simuPOP.moduleInfo())"
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- name: Upload wheels
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uses: actions/upload-artifact@v4
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with:
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name: wheels-macos-intel
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path: wheelhouse/*.whl
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# Build wheels on macOS (Apple Silicon)
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build-wheels-macos-arm:
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name: Build wheels on macOS (Apple Silicon)
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runs-on: macos-14
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install system dependencies
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run: brew install libomp
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- name: Install cibuildwheel
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run: pip install cibuildwheel
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- name: Build wheels
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run: cibuildwheel --output-dir wheelhouse
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env:
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CIBW_BUILD: "cp39-macosx_arm64 cp310-macosx_arm64 cp311-macosx_arm64 cp312-macosx_arm64 cp313-macosx_arm64"
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CIBW_BEFORE_BUILD: pip install scikit-build-core cmake ninja swig
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CIBW_ENVIRONMENT: OpenMP_ROOT=/opt/homebrew/opt/libomp
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CIBW_TEST_COMMAND: python -c "import simuPOP; print(simuPOP.moduleInfo())"
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- name: Upload wheels
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uses: actions/upload-artifact@v4
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with:
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name: wheels-macos-arm
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path: wheelhouse/*.whl
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# Build wheels on Windows
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build-wheels-windows:
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name: Build wheels on Windows
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runs-on: windows-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install zlib via vcpkg
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run: vcpkg install zlib:x64-windows
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- name: Install cibuildwheel
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run: pip install cibuildwheel
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- name: Build wheels
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run: cibuildwheel --output-dir wheelhouse
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env:
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CIBW_BUILD: "cp39-win_amd64 cp310-win_amd64 cp311-win_amd64 cp312-win_amd64 cp313-win_amd64"
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CIBW_BEFORE_BUILD: pip install scikit-build-core cmake ninja swig
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CIBW_ENVIRONMENT: CMAKE_TOOLCHAIN_FILE="C:/vcpkg/scripts/buildsystems/vcpkg.cmake"
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CIBW_TEST_COMMAND: python -c "import simuPOP; print(simuPOP.moduleInfo())"
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- name: Upload wheels
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uses: actions/upload-artifact@v4
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with:
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name: wheels-windows
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path: wheelhouse/*.whl
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# Upload to PyPI
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upload-pypi:
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name: Upload to PyPI
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needs: [build-sdist, build-wheels-linux, build-wheels-macos-intel, build-wheels-macos-arm, build-wheels-windows]
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runs-on: ubuntu-latest
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# Only upload on release or manual trigger with upload_to_pypi=true
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if: github.event_name == 'release' || (github.event_name == 'workflow_dispatch' && github.event.inputs.upload_to_pypi == 'true')
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environment:
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name: pypi
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url: https://pypi.org/project/simuPOP/
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permissions:
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id-token: write # Required for trusted publishing
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steps:
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- name: Download all artifacts
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uses: actions/download-artifact@v4
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with:
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path: dist
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merge-multiple: true
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- name: List distribution files
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run: ls -la dist/
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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packages-dir: dist/
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# Optional: Upload to TestPyPI for testing
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upload-testpypi:
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name: Upload to TestPyPI
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needs: [build-sdist, build-wheels-linux, build-wheels-macos-intel, build-wheels-macos-arm, build-wheels-windows]
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runs-on: ubuntu-latest
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# Only on manual trigger with upload_to_pypi=false (for testing)
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if: github.event_name == 'workflow_dispatch' && github.event.inputs.upload_to_pypi == 'false'
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environment:
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name: testpypi
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url: https://test.pypi.org/project/simuPOP/
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permissions:
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id-token: write
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steps:
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- name: Download all artifacts
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uses: actions/download-artifact@v4
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with:
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path: dist
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merge-multiple: true
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- name: List distribution files
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run: ls -la dist/
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- name: Publish to TestPyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/
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packages-dir: dist/

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