crispr-sieve/.gitignore at main · Bonney96/crispr-sieve · GitHub

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# ── pixi ────────────────────────────────────────────────────────────────────
# .pixi/ is the installed environment (like node_modules) — never commit
.pixi/
# pixi.lock IS committed — it pins exact dependency versions for reproducibility

# ── Nextflow ─────────────────────────────────────────────────────────────────
.nextflow/
.nextflow.log
.nextflow.log.*
work/
results/

# ── Python ───────────────────────────────────────────────────────────────────
__pycache__/
*.py[cod]
*$py.class
*.egg-info/
*.egg
dist/
build/
.eggs/
.venv/
venv/

# ── Testing ──────────────────────────────────────────────────────────────────
.pytest_cache/
.coverage
htmlcov/
coverage.xml
*.coveragerc

# ── Trained models (large binaries) ──────────────────────────────────────────
models/*.pkl
models/*.joblib
models/*.json
# Keep directory tracked:
!models/.gitkeep

# ── Claude Code local settings (user-specific; project settings.json is committed)
.claude/settings.local.json

# ── macOS ─────────────────────────────────────────────────────────────────────
.DS_Store
.AppleDouble

# ── Editors ──────────────────────────────────────────────────────────────────
.idea/
.vscode/
*.swp
*.swo
*~

# ── Logs ─────────────────────────────────────────────────────────────────────
*.log