Update documentation for SIST 1.0.0 #11
Workflow file for this run
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| name: Pull Request CI | |
| on: | |
| pull_request: | |
| permissions: | |
| contents: read | |
| concurrency: | |
| group: pr-ci-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| jobs: | |
| regression: | |
| name: Regression | |
| runs-on: ubuntu-24.04 | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@8ee1f361103df19b6f8c8655fd3967a8ecb162d5 # v4 | |
| with: | |
| miniforge-variant: Miniforge3 | |
| auto-activate: true | |
| activate-environment: base | |
| conda-remove-defaults: true | |
| channels: conda-forge,bioconda | |
| channel-priority: strict | |
| - name: Install conda-build | |
| shell: bash -l {0} | |
| run: | | |
| conda install -y \ | |
| --override-channels \ | |
| -c conda-forge \ | |
| conda-build | |
| - name: Build and run regression tests | |
| shell: bash -l {0} | |
| run: | | |
| conda build conda-recipe \ | |
| --override-channels \ | |
| -c conda-forge \ | |
| -c bioconda \ | |
| --no-anaconda-upload | |
| docs: | |
| name: Docs | |
| runs-on: ubuntu-24.04 | |
| timeout-minutes: 20 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 | |
| - name: Set up Python 3.14 | |
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 | |
| with: | |
| python-version: "3.14" | |
| - name: Install documentation dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -r docs/requirements.txt | |
| - name: Build documentation | |
| run: | | |
| make -C docs clean | |
| make -C docs html SPHINXOPTS="-W --keep-going" | |
| - name: Upload documentation | |
| if: success() | |
| uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7 | |
| with: | |
| name: docs-html | |
| path: docs/build/html/ | |
| if-no-files-found: error | |
| retention-days: 7 |