Cleanup: remove commented-out code and streamline script logic in papyrus_prepare_example.sh

Author: bolak92

uqdd/data/papyrus_prepare_example.sh

@@ -11,17 +11,6 @@ protdesc=${4:-"ankh-base"}
 split_type=${5:-"random"}
 recalc=${6:-False}
 
-## Calculate the parent directory of the current directory
-#PARENT_DIR="$(cd .. && cd .. && pwd)"
-#
-#echo "PARENT_DIR: ${PARENT_DIR}"
-
-## Check if PARENT_DIR is already in PYTHONPATH
-#if [[ ":$PYTHONPATH:" != *":$PARENT_DIR:"* ]]; then
-#    # If it's not, add it to PYTHONPATH
-#    echo "Adding PARENT_DIR to PYTHONPATH : ${PYTHONPATH}"
-#    export PYTHONPATH="${PARENT_DIR}:${PYTHONPATH}"
-#fi
 
 today=$(date +%Y-%m-%d)
 python data_papyrus.py --activity $activity --sanitize --descriptor-chemical $chemdesc --descriptor-protein $protdesc --split-type $split_type --n-targets $n_targets --max-k-clusters 100 --recalculate $recalc 2>&1 | tee ../logs/"${today}"_papyrus_${activity}_${protdesc}_${chemdesc}_${n_targets}.txt