Building base image locally failed, exiting pipeline!

[astulaaa]

Hello,

I'm running DICAST with GUI, consistently running into:
No output directory created. I copied input BAM file to /DICAST/input/controldir/bamdir
What could be the reason? Everything looked configured correctly

"Accepted possible overwrite of output files.
Working directory is : /BiO/Share/Tool/DICAST/DICAST

Building base image locally failed, exiting pipeline!"

I would appreciate your help a lot!

[amitfenn]

Hi @astulaaa,
can you confirm that you have the following file in the working directory?
/BiO/Share/Tool/DICAST/DICAST/scripts/snakemake/docker-compose.yml

If so, just to understand where this error comes from, could I ask you to run the following code on your terminal?

cd /BiO/Share/Tool/DICAST/DICAST

for img in base conda bowtie star
        do
            if docker-compose -f scripts/snakemake/docker-compose.yml build $img ; then
                echo "Built $img base image locally. \n"
            else 
                echo "\nBuilding $img image locally failed, exiting pipeline!"
            fi
        done

I tried finding this bug and it seems to work fine for me. Could I also ask you for the logs (if there are any) at: /BiO/Share/Tool/DICAST/DICAST/.snakemake/log/***.snakemake.log

P.S. Also, stay tuned for operational updates in the next weeks, I'd be working to make this smoother, so you won't hit simple errors like this.