fix: resolve CRAN concerns regarding DOI usage and insecure URLs

Author: dcarver1

DESCRIPTION

@@ -39,7 +39,6 @@ Imports:
 License: GPL-3
 LazyData: true
 Encoding: UTF-8
-RoxygenNote: 7.3.3
 Suggests: 
     sf,
     knitr,
@@ -56,4 +55,3 @@ Suggests:
     htmlwidgets,
     kableExtra
 VignetteBuilder: knitr
-

R/ERSex.R

@@ -49,7 +49,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom dplyr filter mutate tibble summarise case_when
 #' @importFrom terra vect crop aggregate zonal rasterize as.data.frame

R/ERSin.R

@@ -47,7 +47,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom dplyr tibble pull
 #' @importFrom terra crop aggregate zonal

R/FCSc_mean.R

@@ -91,7 +91,7 @@
 #'                          fcsex = fcs_exsitu)
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom dplyr tibble
 #' @export

R/FCSex.R

@@ -58,7 +58,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @export
 #'

R/FCSin.R

@@ -58,7 +58,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom dplyr tibble
 #' @export

R/GRSex.R

@@ -45,7 +45,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom terra cellSize rasterize mask
 #' @importFrom leaflet leaflet addTiles addPolygons addLegend addRasterImage addCircleMarkers

R/GRSin.R

@@ -34,7 +34,7 @@
 #'
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom terra crop expanse
 #' @importFrom dplyr tibble

R/SRSex.R

@@ -27,7 +27,7 @@
 #'                     )
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom dplyr tibble n
 #' @export

R/SRSin.R

@@ -39,7 +39,7 @@
 #'                     )
 #'
 #' @references
-#' Khoury et al. (2019) Ecological Indicators 98:420-429. doi: 10.1016/j.ecolind.2018.11.016
+#' Khoury et al. (2019) Ecological Indicators 98:420-429. \doi{10.1016/j.ecolind.2018.11.016}
 #' Carver et al. (2021) GapAnalysis: an R package to calculate conservation indicators using spatial information
 #' @importFrom terra vect extract
 #' @importFrom dplyr filter tibble