diff --git a/README.md b/README.md index 55778da..5d5e33a 100644 --- a/README.md +++ b/README.md @@ -79,3 +79,13 @@ This benchmark was developed using the following tools and versions: | Python | 3.12.3 | | R | 4.3.3 | | Snakemake | 8.16.0 | + + +#### Conda installation + +You can install the latest versions of the requirements via e.g. + +```sh +micromamba create -f environment.yml +micromamba activate lr_quant_benchmark +``` diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..66e81d7 --- /dev/null +++ b/environment.yml @@ -0,0 +1,16 @@ +name: lr_quant_benchmark +channels: +- conda-forge +- bioconda +- nodefaults +dependencies: +- kallisto +- oarfish +- python +- snakemake +- bustools +- colorlog +- pysam +- tqdm +- pip: + - git+https://github.com/a-slide/NanoCount.git