Fixed bug in website TOC

Previously, with styles.css the last link in the website table of contents was always highlighted, even if another link was active.

I switched back to csafe.css because it highlights the correct table of contents link. I added the lines of code to csafe.css that fix the bug where the inactive navbar links are white.

Author: stephaniereinders

README.md

@@ -11,17 +11,17 @@ you are a forensic document examiner, legal professional, academic, or
 simply curious about how statistics are applied to handwriting,
 handwriter provides an automated way to evaluate handwriting samples.
 
-## Quick Start
+# Quick Start
 
-### VIEW A DEMO
+## VIEW A DEMO
 
 View a demo of handwriter on handwritten documents from the CSAFE
 Handwriting Database. Go to
 [demo](https://csafe.shinyapps.io/handwriterAppDemo/).
 
-### SIMULATE CASEWORK WITH EXAMPLE DOCUMENTS
+## SIMULATE CASEWORK WITH EXAMPLE DOCUMENTS
 
-#### INSTALLATION
+### INSTALLATION
 
 Handwriter requires R, RStudio IDE, and JAGS.
 
@@ -30,7 +30,7 @@ Handwriter requires R, RStudio IDE, and JAGS.
 -   Install JAGS from
     [SourceForge](https://sourceforge.net/projects/mcmc-jags/files/)
 
-#### LAUNCH THE APP
+### LAUNCH THE APP
 
 Open RStudio, navigate to the console window. Install the handwriterApp
 package. You only need to do this once.
@@ -51,7 +51,7 @@ the pop-up window instead of in a browser, some links will not work.
 
 Click **Simulate Casework** and follow the instructions in the app.
 
-## Advanced
+# Advanced
 
 You can install handwriter from CRAN with:
 

README.qmd

@@ -2,7 +2,7 @@
 title: "handwriter"
 format: 
   html:
-    theme: styles.css
+    theme: csafe.css
 ---
 
 ```{r, include = FALSE}
@@ -20,22 +20,22 @@ knitr::opts_chunk$set(
 
 Handwriter is designed to assist forensic examiners by analyzing handwritten documents against a *closed set* of potential writers. It determines the probability that each writer wrote the document. Whether you are a forensic document examiner, legal professional, academic, or simply curious about how statistics are applied to handwriting, handwriter provides an automated way to evaluate handwriting samples.
 
-## Quick Start
+# Quick Start
 
-### VIEW A DEMO
+## VIEW A DEMO
 
 View a demo of handwriter on handwritten documents from the CSAFE Handwriting Database. Go to [demo](https://csafe.shinyapps.io/handwriterAppDemo/).
 
-### SIMULATE CASEWORK WITH EXAMPLE DOCUMENTS
+## SIMULATE CASEWORK WITH EXAMPLE DOCUMENTS
 
-#### INSTALLATION
+### INSTALLATION
 
 Handwriter requires R, RStudio IDE, and JAGS.
 
 -   Install R and RStudio from [POSIT](https://posit.co/download/rstudio-desktop/)
 -   Install JAGS from [SourceForge](https://sourceforge.net/projects/mcmc-jags/files/)
 
-#### LAUNCH THE APP
+### LAUNCH THE APP
 
 Open RStudio, navigate to the console window. Install the handwriterApp package. You only need to do this once.
 
@@ -54,7 +54,7 @@ In the pop-up window, click **Open in Browser**. If you use the app in the pop-u
 
 Click **Simulate Casework** and follow the instructions in the app.
 
-## Advanced
+# Advanced
 
 You can install handwriter from CRAN with:
 

_quarto/CITATION.md

@@ -5,15 +5,17 @@ To cite package ‘handwriter’ in publications use:
 
   Iowa State University of Science and Technology on behalf of its Center for
   Statistics and Applications in Forensic Evidence, Berry N, Reinders S,
-  Taylor J (????). _handwriter: Handwriting Analysis in R_. R package version
-  3.2.0, <https://github.com/CSAFE-ISU/handwriter>.
+  Taylor J (2024). _handwriter: Handwriting Analysis in R_. R package version
+  3.1.1.9000, commit 32d80c5bc8919f4cef91c518b1e77ae7cba5651e,
+  <https://github.com/CSAFE-ISU/handwriter>.
 
 A BibTeX entry for LaTeX users is
 
   @Manual{,
     title = {handwriter: Handwriting Analysis in R},
     author = {{Iowa State University of Science and Technology on behalf of its Center for Statistics and Applications in Forensic Evidence} and Nick Berry and Stephanie Reinders and James Taylor},
-    note = {R package version 3.2.0},
+    year = {2024},
+    note = {R package version 3.1.1.9000, commit 32d80c5bc8919f4cef91c518b1e77ae7cba5651e},
     url = {https://github.com/CSAFE-ISU/handwriter},
   }
 ```

_quarto/_quarto.yml

@@ -9,13 +9,17 @@ website:
         file: index.qmd
       - text: News
         file: NEWS.md
+      - text: License
+        file: LICENSE.md
+      - text: Citation
+        file: CITATION.md
     right:
       - icon: github
         href: https://github.com/CSAFE-ISU/handwriter
         aria-label: handwriter GitHub
 format:
   html:
-    css: styles.css
+    css: csafe.css
     toc: true
-    toc-depth: 2
+    toc-depth: 3
     toc-location: left