NeuroClaw/.gitignore at main · CUHK-AIM-Group/NeuroClaw · GitHub

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# Runtime & build
__pycache__/
*.py[cod]
*.pyo
*.log
logs/
output/
deploy/
models/
benchmark-env/
hcp_env/

# Data
data/
neurooracle/data
UKBAnalytica_v2-main

# Experiment runs (harmonization pilots, model training outputs, etc.)
runs/

# Secrets
.env
.env.local
.env.keys
*.secret
api_keys.txt

# OS & IDE
.DS_Store
Thumbs.db
.vscode/
.cursor/
.claude

# Project-specific ignores
.neuroclaw_checkpoints/
neuroclaw_environment.json
installer/install_log.txt
/scripts/
!skills/*/scripts/
skills/brain_gnn/scripts/*.json
skills/brain_gnn/scripts/_*
main.tex
tools_probe.py
TODO.md
CHANGELOG.md
docs/skill-usage-trace.md
docs/autoresearch_papers_overview.md
neurooracle/README.md
neurooracle/autoresearch_pipeline.md
materials/CVPR_2026/neuroclaw_preprint_nature.tex
materials/CVPR_2026/eeg_encoding_protocol_final.tex
skills/brain_gnn/scripts/run_sex_optimization.py
skills/brain_gnn/scripts/run_kg_experiment.py
skills/brain_gnn/scripts/run_brainnetcnn_scan.py
_lggnn.json
export_tables.py
*.pdf
skills/brain_gnn/scripts/lifespan_age_FINAL_SUMMARY.md