Hi,
I'm encountering an issue: although PyMOL is listed as "running" in Claude's settings, I'm unable to establish a connection when I try to access it.
Core Problem:
Based on the log analysis, PyMOL's internal service (MCP server) initializes successfully, and the claude-ai client connects to it. Calls to the open_pymol tool report "Pymol opened," suggesting PyMOL is launched successfully.
However, nearly all subsequent calls to the run_pymol_command tool (e.g., attempting to execute commands like Workspace 5D0O, set remote_enable, 1, or bg_color white) fail, consistently returning the error [Errno 61] Connection refused. Eventually, the PyMOL service disconnects unexpectedly.
Could the primary reason for this issue be that the PyMOL version is Educational version?
Hi,
I'm encountering an issue: although PyMOL is listed as "running" in Claude's settings, I'm unable to establish a connection when I try to access it.
Core Problem:
Based on the log analysis, PyMOL's internal service (MCP server) initializes successfully, and the claude-ai client connects to it. Calls to the open_pymol tool report "Pymol opened," suggesting PyMOL is launched successfully.
However, nearly all subsequent calls to the run_pymol_command tool (e.g., attempting to execute commands like Workspace 5D0O, set remote_enable, 1, or bg_color white) fail, consistently returning the error [Errno 61] Connection refused. Eventually, the PyMOL service disconnects unexpectedly.
Could the primary reason for this issue be that the PyMOL version is Educational version?