PyCall to PythonCall changes #348
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| name: CI | |
| on: | |
| push: | |
| branches: [master] | |
| tags: ["*"] | |
| pull_request: | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.devitoversion }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - lts | |
| - 1 # automatically expands to the latest stable 1.x release of Julia | |
| devitoversion: | |
| - 'main' | |
| - 'devitopro' | |
| - '' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| env: | |
| DEVITO_LANGUAGE: "openmp" | |
| DEVITO_ARCH: "gcc" | |
| OMP_NUM_THREADS: "2" | |
| DEVITO_AUTOPADDING: "0" | |
| RDMAV_FORK_SAFE: 1 | |
| JULIA_CONDAPKG_BACKEND: "Null" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: julia-actions/cache@v1 | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - name: download miniconda manually | |
| run: wget https://repo.anaconda.com/miniconda/Miniconda3-py312_24.5.0-0-Linux-x86_64.sh | |
| - name: run install | |
| run: bash Miniconda3-py312_24.5.0-0-Linux-x86_64.sh -b -p $HOME/miniconda | |
| - name: run path export | |
| run: | | |
| echo "$HOME/miniconda/bin:" >> $GITHUB_PATH | |
| echo "PYTHON=$HOME/miniconda/bin/python3" >> $GITHUB_ENV | |
| echo "PYCALL_JL_RUNTIME_PYTHON=$HOME/miniconda/bin/python3" >> $GITHUB_ENV | |
| echo "CONDA_EXE=$HOME/miniconda/bin/conda" >> $GITHUB_ENV | |
| - name: run build for devito/devitopro | |
| if: matrix.devitoversion == 'devitopro' | |
| run: julia --color=yes --project -e 'using Pkg; Pkg.build(verbose=true)' | |
| env: | |
| DEVITO_PRO: ${{ secrets.DEVITOPRO }} | |
| - name: run build for devito | |
| if: ! matrix.devitoversion != 'devitopro' | |
| run: julia --color=yes --project -e 'using Pkg; Pkg.build(verbose=true)' | |
| env: | |
| DEVITO_BRANCH: ${{ matrix.devitoversion }} | |
| - name: use system MPI | |
| run: | | |
| # https://juliaparallel.org/MPI.jl/latest/configuration/#Configuration-of-the-MPI.jl-testsuite | |
| julia --project=test -e 'using Pkg; Pkg.instantiate(); Pkg.status(); using MPIPreferences; MPIPreferences.use_system_binary()' | |
| # note Pkg.test docs indicate --inline=no can improve coverage | |
| - name: run tests | |
| run: | | |
| julia --color=yes --check-bounds=yes --inline=no --project -e 'using Pkg; Pkg.test(coverage=true)' | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| file: lcov.info | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1' | |
| - name: install mpi | |
| run: sudo apt-get update | |
| - run: sudo apt-get install -y mpich | |
| - name: download miniconda manually | |
| run: wget https://repo.anaconda.com/miniconda/Miniconda3-py312_24.5.0-0-Linux-x86_64.sh | |
| - name: run install | |
| run: bash Miniconda3-py312_24.5.0-0-Linux-x86_64.sh -b -p ~/miniconda | |
| - name: run path export | |
| run: | | |
| echo "$HOME/miniconda/bin:" >> $GITHUB_PATH | |
| echo "PYTHON=$HOME/miniconda/bin/python3" >> $GITHUB_ENV | |
| echo "PYCALL_JL_RUNTIME_PYTHON=$HOME/miniconda/bin/python3" >> $GITHUB_ENV | |
| echo "CONDA_EXE=$HOME/miniconda/bin/conda" >> $GITHUB_ENV | |
| - run: julia --color=yes --project -e 'using Pkg; Pkg.build()' | |
| - name: Install dependencies | |
| run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()' | |
| - run: | | |
| julia --project=docs -e ' | |
| using Pkg | |
| Pkg.develop(PackageSpec(path=pwd())) | |
| Pkg.instantiate()' | |
| - run: julia --project=docs docs/make.jl | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} |