Add perlmutter.make (#126)

* Add perlmutter.make

* update make file

* Remove generate_meshes.sh from version control

---------

Co-authored-by: Hongyu Chen <[email protected]>

Author: hongyuchen1030

mk/system.make

@@ -31,9 +31,10 @@ else ifeq ($(UNAME),Linux)
   ifeq ($(SYSTEM),)
     SYSTEM= AGRI
     SYSTEM_MAKEFILE= agri.make
-  endif   
+  endif
 endif
 
+
 include $(TEMPESTREMAPDIR)/mk/system/$(SYSTEM_MAKEFILE)
 
 # Build identifier

mk/system/perlmutter.make

@@ -6,22 +6,31 @@
 
 # NERSC Babbage Testbed
 
+
 CXX=               CC
 F90=               ftn
 MPICXX=            CC
 MPIF90=            ftn
-CXXFLAGS += -MT -MD -MP -MF
+
 
 # NetCDF
 NETCDF_ROOT=       $(NETCDF_DIR)
 NETCDF_CXXFLAGS=   -I$(NETCDF_ROOT)/include
 NETCDF_LIBRARIES=  -lnetcdf
 NETCDF_LDFLAGS=    -L$(NETCDF_ROOT)/lib
 
+
+# HDF5
+HDF5_ROOT=         $(HDF5_DIR)
+CPPFLAGS +=        -I$(HDF5_ROOT)/include
+LDFLAGS  +=        -L$(HDF5_ROOT)/lib
+LDLIBS   +=        -lhdf5_hl -lhdf5
+
 # LAPACK (Intel MKL)
 LAPACK_INTERFACE=  FORTRAN
 LAPACK_CXXFLAGS=
 LAPACK_LIBRARIES=
 LAPACK_LDFLAGS=   
 
+
 # DO NOT DELETE