GNU building problem on Cheyenne

[lvankampenhout]

Hi Paul and others, I am currently building TempestRemap on NCAR machine Cheyenne. I'm using the 2.0.0 tag to be safe. My build directories are located here:

/glade/u/home/lvank/github/tempestremap/build (gnu)
/glade/u/home/lvank/github/tempestremap/build_intel (intel)

Both contain a bash script (build_*.bsh) containing the various exports required for configure. Hope you can access these.

GNU

With a couple of module loads and exports I managed to successfully go through the GNU configure. Yet the actual build fails:

  CXXLD    libTempestRemap.la
ar: src/Announce.o: No such file or directory
Makefile:805: recipe for target 'libTempestRemap.la' failed
make: *** [libTempestRemap.la] Error 1

Someone may want to look into this.

Intel

OK, at first intel building also didn't work. But by updating to the intel/18.0.1 compiler I could successfully compile with intel. I'm narrowing the title to "GNU building problem on Cheyenne". I'm leaving my build configuration here for future reference:
/glade/u/home/lvank/github/tempestremap/build_intel/build_intel.bsh

[paullric]

Apologies -- somehow this issue got overlooked. I've successfully reproduced it even with the most up-to-date version of the code:

ullrich/tempestremap> setenv CXX g++
ullrich/tempestremap> setenv CC gcc
ullrich/tempestremap> autoreconf -fi
...
ullrich/tempestremap> mkdir build && cd build
...
tempestremap/build> setenv LDFLAGS "-L/glade/u/apps/ch/opt/netlib/3.7.0/gnu/4.8.5/lib/ -lgfortran"
...
tempestremap/build> ../configure --with-blas=/glade/u/apps/ch/opt/netlib/3.7.0/gnu/4.8.5/ --with-netcdf=/glade/u/apps/ch/opt/netcdf/4.4.1.1/gnu/6.3.0/
...
tempestremap/build> make all -j 4
  CXX      src/GenerateLambertConfConicMesh.lo
  CXX      src/GenerateOverlapMesh.lo
  CXX      src/GenerateOverlapMesh_v1.lo
  CXX      src/GaussQuadrature.lo
  CXX      src/GaussLobattoQuadrature.lo
  CXX      src/LegendrePolynomial.lo
  CXX      src/FiniteElementTools.lo
  CXX      src/NetCDFUtilities.lo
  CXX      src/ncvalues.lo
  CXX      src/netcdf.lo
  CXX      src/OverlapMesh.lo
  CXX      src/OfflineMap.lo
  CXX      src/LinearRemapSE0.lo
  CXX      src/LinearRemapFV.lo
../src/LinearRemapFV.cpp: In function 'void BuildFitArray(const Mesh&, const TriangularQuadratureRule&, int, const AdjacentFaceVector&, int, int, const DataArray1D<double>&, DataArray2D<double>&, DataArray1D<double>&)':
../src/LinearRemapFV.cpp:668:17: note: #pragma message: Pre-triangularize this matrix for efficiency
 #pragma message "Pre-triangularize this matrix for efficiency"
                 ^
  CXX      src/TriangularQuadrature.lo
  CXX      src/ApplyOfflineMap.lo
  CXX      src/GenerateOfflineMap.lo
  CXX      src/GenerateConnectivityData.lo
  CXX      src/kdtree.lo
  CXX      src/triangle.lo
  CXX      src/GenerateTestData.o
  CXX      src/GenerateCSMeshExe.o
  CXX      src/GenerateRLLMeshExe.o
  CXX      src/GenerateUTMMeshExe.o
  CXX      src/GenerateICOMeshExe.o
  CXX      src/GenerateVolumetricMesh.o
  CXX      src/GenerateLambertConfConicMeshExe.o
  CXX      src/GenerateOverlapMeshExe.o
  CXX      src/GenerateOverlapMeshExe_v1.o
  CXX      src/ApplyOfflineMapExe.o
  CXX      src/GenerateOfflineMapExe.o
  CXX      src/CalculateDiffNorms.o
  CXX      src/GenerateGLLMetaDataExe.o
  CXX      src/GenerateConnectivityFile.o
  CXX      src/GenerateTransposeMap.o
  CXX      src/CoarsenRectilinearData.o
  CXX      src/MeshToTxt.o
  CXX      src/ShpToMesh.o
  CXXLD    libTempestRemap.la
ar: src/Announce.o: No such file or directory
Makefile:823: recipe for target 'libTempestRemap.la' failed
make: *** [libTempestRemap.la] Error 1
make: *** Waiting for unfinished jobs....

[vijaysm]

@paullric I'll take a look at this later today. I've only checked on yellowstone in the past and have not configured on cheyenne before. Will make sure the autotools configuration works there as well.

[paullric]

I can verify it works fine with the Intel compiler. It seems to purely be an issue with the GNU compiler. Thanks!

…

On Jan 23, 2019, at 6:15 AM, vijaysm ***@***.***> wrote: @paullric <https://github.com/paullric> I'll take a look at this later today. I've only checked on yellowstone in the past and have not configured on cheyenne before. Will make sure the autotools configuration works there as well. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#36 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFFX5NMnSfaix5l0jivVzcXnQ03WOx-Nks5vGG5ygaJpZM4SD6tx>.