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lines changed Original file line number Diff line number Diff line change 1- [X.X.X ]
1+ [18.0.0 ]
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Original file line number Diff line number Diff line change @@ -25,7 +25,7 @@ Step 1. Installing BALSAMIC
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28- conda create --name S_balsamic -c conda-forge python=3.11 pip "cython<3" pygraphviz wkhtmltopdf snakemake-executor-plugin-slurm
28+ conda create -n S_balsamic -y - c conda-forge -c bioconda python=3.11 pip "cython<3" pygraphviz wkhtmltopdf snakemake-executor-plugin-slurm pysam=0.23.3 cyvcf2=0.31.1 htslib samtools
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@@ -41,7 +41,7 @@ Step 1. Installing BALSAMIC
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44- pip install --no-build-isolation --no-cache-dir -U git+https://github.com/Clinical-Genomics/BALSAMIC
44+ pip install --no-cache-dir --no-deps -U git+https://github.com/Clinical-Genomics/BALSAMIC
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