changelog

Author: mathiasbio

BALSAMIC/constants/workflow_profile/config.yaml

@@ -99,7 +99,7 @@ set-resources:
     runtime: 360
   bedtools_pad_bedfile:
     mem_mb: min(230000, 1000 * attempt)
-    runtime: 20
+    runtime: 40
   vardict_sort:
     mem_mb: min(230000, 15000 * attempt)
     runtime: 30
@@ -200,10 +200,10 @@ set-resources:
     runtime: 350
     mem_mb: min(230000, 40000 * attempt)
   bedtools_sort_and_merge:
-    runtime: 20
+    runtime: 40
     mem_mb: min(230000, 400 * attempt)
   extend_short_bedregions:
-    runtime: 20
+    runtime: 40
     mem_mb: min(230000, 400 * attempt)
   create_coverage:
     runtime: 360

CHANGELOG.rst

@@ -6,6 +6,8 @@ Added:
 
 Changed:
 ^^^^^^^^
+* increased runtime for a couple of small rules https://github.com/Clinical-Genomics/BALSAMIC/pull/1641
+* decreased memory for headjobs to 500mb https://github.com/Clinical-Genomics/BALSAMIC/pull/1641
 
 Removed:
 ^^^^^^^^