Skip to content

Commit eb685f1

Browse files
authored
feat: Add clinvarID to VCF (#1547)
#### Changed - renamed CLNACC to CLNVID for Clinvar annotations
1 parent 07e35e4 commit eb685f1

File tree

2 files changed

+3
-2
lines changed

2 files changed

+3
-2
lines changed

BALSAMIC/workflows/balsamic.smk

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -188,7 +188,7 @@ research_annotations.append(
188188
{
189189
"file": Path(config["reference"]["clinvar"]).as_posix(),
190190
"fields": [
191-
"CLNACC",
191+
"CLNVID",
192192
"CLNREVSTAT",
193193
"CLNSIG",
194194
"ORIGIN",
@@ -202,7 +202,7 @@ research_annotations.append(
202202
],
203203
"ops": ["self", "self", "self", "self", "self", "self", "self", "self", "self", "self", "self"],
204204
"names": [
205-
"CLNACC",
205+
"CLNVID",
206206
"CLNREVSTAT",
207207
"CLNSIG",
208208
"ORIGIN",

CHANGELOG.rst

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -26,6 +26,7 @@ Changed:
2626
* Updated cluster resources for tnscope WGS TN https://github.com/Clinical-Genomics/BALSAMIC/pull/1535
2727
* Disable SV calling in TNscope https://github.com/Clinical-Genomics/BALSAMIC/pull/1541
2828
* Remove VarDict parallelization per chromosome https://github.com/Clinical-Genomics/BALSAMIC/pull/1544
29+
* Renamed CLNACC INFO field to CLNVID https://github.com/Clinical-Genomics/BALSAMIC/pull/1547
2930

3031
Removed:
3132
^^^^^^^^

0 commit comments

Comments
 (0)