Merge pull request #2020 from Clinical-Genomics/release/11.1.3

Release/11.1.3

Author: jemten

CHANGELOG.md

@@ -3,6 +3,10 @@
 All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](http://semver.org/).
 
+## [11.1.3]
+
+- Adds Gens' bed index file to deliverables
+
 ## [11.1.2]
 
 - Fixed a bug in the mitochondrial deletion recipe affecting samples with 0 intermediate discordant MT reads.

lib/MIP/Constants.pm

@@ -82,7 +82,7 @@ Readonly our %ANALYSIS => (
 );
 
 ## Set MIP version
-Readonly our $MIP_VERSION => q{11.1.2};
+Readonly our $MIP_VERSION => q{11.1.3};
 
 ## Cli
 Readonly our $MOOSEX_APP_SCEEN_WIDTH => 160;

lib/MIP/Recipes/Analysis/Gens_generatedata.pm

@@ -253,6 +253,7 @@ sub analysis_gens_generatedata {
                     format           => q{bed},
                     id               => $sample_id,
                     path             => $outfile_path{$file_tag},
+                    path_index       => $outfile_path{$file_tag} . q{.tbi},
                     recipe_name      => $recipe_name,
                     sample_info_href => $sample_info_href,
                     tag              => $file_tag,

templates/mip_install_config.yaml

@@ -125,7 +125,7 @@ container:
   mip:
     executable:
       mip:
-    uri: docker.io/clinicalgenomics/mip:v11.1.2
+    uri: docker.io/clinicalgenomics/mip:v11.1.3
   multiqc:
     executable:
       multiqc: