Update VRS and Gicam VCF keys

Signed-off-by: Tor Björgen <tor.bjorgen@scilifelab.se>

Author: torbjorgen

conf/modules/rank_variants.config

@@ -121,7 +121,7 @@ process {
     }
 
     withName: '.*RANK_VARIANTS_SNV:BCFTOOLS_MERGE_GENMOD_GICAM' {
-        ext.args   = { "--columns VrsModelPrediction,VrsModelExplanation,GICAM" }
+        ext.args   = { "--columns MivmirScore,MivmirExplanation,GicamScore" }
         ext.prefix = { "${meta.id}_snv_ranked_${meta.set}" }
     }
 

modules/local/gicam/main.nf

@@ -4,7 +4,7 @@ process GICAM_INFER {
     tag "${meta.id}"
     label 'process_single'
 
-    container "docker.io/clinicalgenomics/rdds_mivmir:v1.12.0-rc3"
+    container "docker.io/clinicalgenomics/rdds_mivmir:v1.12.0-rc6"
 
     beforeScript "mkdir ${task.workDir}/rdds-tmp"
     afterScript "rm -r ${task.workDir}/rdds-tmp"
@@ -25,7 +25,7 @@ process GICAM_INFER {
     task.ext.when == null || task.ext.when
 
     script:
-    def VERSION = 'v1.12.0-rc3'
+    def VERSION = 'v1.12.0-rc6'
     """
     . /opt/pyenv/bin/activate
     export PYTHONPATH=/rdds/src

modules/local/mivmir/main.nf

@@ -4,7 +4,7 @@ process MIVMIR_INFER {
     tag "${meta.id}"
     label 'process_single'
 
-    container "docker.io/clinicalgenomics/rdds_mivmir:v1.12.0-rc3"
+    container "docker.io/clinicalgenomics/rdds_mivmir:v1.12.0-rc6"
 
     beforeScript "mkdir ${task.workDir}/rdds-tmp"
     afterScript "rm -r ${task.workDir}/rdds-tmp"
@@ -25,7 +25,7 @@ process MIVMIR_INFER {
     task.ext.when == null || task.ext.when
 
     script:
-    def VERSION = 'v1.12.0-rc3'
+    def VERSION = 'v1.12.0-rc6'
     """
     . /opt/pyenv/bin/activate
     export PYTHONPATH=/rdds/src