Goals
Make sure MIVMIR, GICAM functions well on raredisease pipeline with new reference genome.
Revalidate MIVMIR, GICAM on raredisease v3.0.0 using new reference genome.
Possibly adjust MIVMIR, GICAM to fit to new annotations in raredisease pipeline.
Rerun mivmir_validation pipeline with updated annotation modules mimicking raredisease v3.
Outstanding Issues
In mivmir_validation pipeline, the input is not re-annotated but pulled from already processes cases.
This would require us to rerun 300 solved cases in raredisease to have them re-annotated with raredisease Mario.
Goals
Make sure MIVMIR, GICAM functions well on raredisease pipeline with new reference genome.
Revalidate MIVMIR, GICAM on raredisease v3.0.0 using new reference genome.
Possibly adjust MIVMIR, GICAM to fit to new annotations in raredisease pipeline.
Rerun mivmir_validation pipeline with updated annotation modules mimicking raredisease v3.
Outstanding Issues
In mivmir_validation pipeline, the input is not re-annotated but pulled from already processes cases.
This would require us to rerun 300 solved cases in raredisease to have them re-annotated with raredisease Mario.