Error in { : task 1 failed - "missing value where TRUE/FALSE needed"

[divyavella]

Hi Tanmay,

I was trying to analyze a group from the Norovirus data and ran into this issue. Everything in the comparison file looks okay and the sample names match in the expression file as well, so I am not sure where the issue is arising from. Attached the comparison and expression file for your reference.

CPM.combined.featureCounts_genes.UQ.log2cpm_plus1_10hkg.05022024.csv

gGII3_vs_GII3_72hrs_comparisons-prenormalized.xlsx

example3-prenormalized

runModac(inputFile = "/Desktop/MODAC/05212024_Crawford_Norovirus/CPM.combined.featureCounts_genes.UQ.log2cpm_plus1_10hkg.05022024.xlsx",
comparisonsFile = "/Desktop/MODAC/05212024_Crawford_Norovirus/GII3_over_gGII3_72hrs/gGII3_vs_GII3_72hrs_comparisons-prenormalized.xlsx",
type = "none",
outdir = "/Desktop/MODAC/05212024_Crawford_Norovirus/GII3_over_gGII3_72hrs/Results",
project_title = "GII3 over gGII3 - 72hrs samples",
project_subtitle = "MODAC Pipeline Analysis [prenormalized]",
# heatmap_color_scale = c("blue","white","red"),
samplesAreRows = F,
# sampleIDRow = 2,
# min_signal = NULL,
scriptPath = "/Repos/runModac/R/")

Best
Divya

[trgandhi]

@divyavella please add the .xlsx input file that you are using in your code ("CPM.combined.featureCounts_genes.UQ.log2cpm_plus1_10hkg.05022024.xlsx"). you have only included a .csv file here.