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Update documentation #16

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@DavidLemayian

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@DavidLemayian

The documentation should be updated to improve ability for contribution and generally tool build. This includes in-line documentation and the README.md.

  • README.md
  • Javascript files:
    • healthtools.js
    • story.js
  • HTML files:
    • _layouts
    • _includes
    • Other

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