fix calibration default GUI

Author: RobbinBouwmeester

CHANGELOG.md

@@ -5,6 +5,11 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to
 [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+# [2.1.6] - 2023-05-09
+
+### Changed
+- fix setting GUI calibration default
+
 # [2.1.5] - 2023-05-08
 
 ### Changed

deeplc/_argument_parser.py

@@ -139,7 +139,8 @@ def parse_arguments(gui=False):
     calibration_group.add_argument(
         "--pygam_calibration",
         dest="pygam_calibration",
-        default=True,
+        action="store_true",
+        #default=True,
         help=(
             "use pyGAM generalized additive model as calibration method; "
             "recommended; default"
@@ -150,8 +151,8 @@ def parse_arguments(gui=False):
     calibration_group.add_argument(
         "--transfer_learning",
         dest="transfer_learning",
-        #action="store_false",
-        default=False,
+        action="store_false",
+        #default=False,
         help="use transfer learning as calibration method",
         **gooey_args["transfer_learning"]
     )

setup.py

@@ -6,7 +6,7 @@
 
 setup(
     name='deeplc',
-    version='2.1.5',
+    version='2.1.6',
     license='apache-2.0',
     description='DeepLC: Retention time prediction for (modified) peptides using Deep Learning.',
     long_description=LONG_DESCRIPTION,