diff --git a/MCPForUnity/Editor/Tools/Prefabs/ManagePrefabs.cs b/MCPForUnity/Editor/Tools/Prefabs/ManagePrefabs.cs
index 65d158a5d..8e4733fe1 100644
--- a/MCPForUnity/Editor/Tools/Prefabs/ManagePrefabs.cs
+++ b/MCPForUnity/Editor/Tools/Prefabs/ManagePrefabs.cs
@@ -60,11 +60,15 @@ public static object HandleCommand(JObject @params)
                         return OpenPrefabStage(prefabPath);
                     }
                     case ACTION_SAVE_PREFAB_STAGE:
-                        return SavePrefabStage();
+                    {
+                        bool refresh = @params["refresh"]?.ToObject<bool>() ?? true;
+                        return SavePrefabStage(refresh);
+                    }
                     case ACTION_CLOSE_PREFAB_STAGE:
                     {
                         bool saveBeforeClose = @params["saveBeforeClose"]?.ToObject<bool>() ?? false;
-                        return ClosePrefabStage(saveBeforeClose);
+                        bool refresh = @params["refresh"]?.ToObject<bool>() ?? true;
+                        return ClosePrefabStage(saveBeforeClose, refresh);
                     }
                     default:
                         return new ErrorResponse($"Unknown action: '{action}'. Valid actions are: {SupportedActions}.");
@@ -1338,7 +1342,7 @@ private static object OpenPrefabStage(string requestedPath)
             }
         }
 
-        private static object SavePrefabStage()
+        private static object SavePrefabStage(bool refreshAfterSave = true)
         {
             try
             {
@@ -1348,12 +1352,12 @@ private static object SavePrefabStage()
                     return new ErrorResponse("Not currently in prefab editing mode. Open a prefab stage first with open_prefab_stage.");
                 }
 
-                if (!TrySavePrefabStage(prefabStage, out string prefabPath, out string errorMessage))
+                if (!TrySavePrefabStage(prefabStage, refreshAfterSave, out string prefabPath, out string errorMessage))
                 {
                     return new ErrorResponse(errorMessage);
                 }
 
-                return new SuccessResponse($"Saved prefab stage changes for '{prefabPath}'.", new { prefabPath, saved = true });
+                return new SuccessResponse($"Saved prefab stage changes for '{prefabPath}'.", new { prefabPath, saved = true, refreshed = refreshAfterSave });
             }
             catch (Exception e)
             {
@@ -1361,7 +1365,7 @@ private static object SavePrefabStage()
             }
         }
 
-        private static object ClosePrefabStage(bool saveBeforeClose = false)
+        private static object ClosePrefabStage(bool saveBeforeClose = false, bool refreshAfterSave = true)
         {
             try
             {
@@ -1373,7 +1377,7 @@ private static object ClosePrefabStage(bool saveBeforeClose = false)
 
                 if (saveBeforeClose)
                 {
-                    if (!TrySavePrefabStage(prefabStage, out _, out string errorMessage))
+                    if (!TrySavePrefabStage(prefabStage, refreshAfterSave, out _, out string errorMessage))
                     {
                         return new ErrorResponse(errorMessage);
                     }
@@ -1389,7 +1393,7 @@ private static object ClosePrefabStage(bool saveBeforeClose = false)
             }
         }
 
-        private static bool TrySavePrefabStage(PrefabStage prefabStage, out string prefabPath, out string errorMessage)
+        private static bool TrySavePrefabStage(PrefabStage prefabStage, bool refreshAfterSave, out string prefabPath, out string errorMessage)
         {
             prefabPath = prefabStage.assetPath;
             errorMessage = null;
@@ -1410,7 +1414,10 @@ private static bool TrySavePrefabStage(PrefabStage prefabStage, out string prefa
 
             prefabStage.ClearDirtiness();
             AssetDatabase.SaveAssets();
-            AssetDatabase.Refresh();
+            if (refreshAfterSave)
+            {
+                AssetDatabase.Refresh();
+            }
             return true;
         }
 
diff --git a/Server/src/services/tools/manage_prefabs.py b/Server/src/services/tools/manage_prefabs.py
index de7373c92..c76da08e6 100644
--- a/Server/src/services/tools/manage_prefabs.py
+++ b/Server/src/services/tools/manage_prefabs.py
@@ -38,7 +38,8 @@
         "Use component_properties with modify_contents to set serialized fields on existing components "
         "(e.g. component_properties={\"Rigidbody\": {\"mass\": 5.0}, \"MyScript\": {\"health\": 100}}). "
         "Supports object references via {\"guid\": \"...\"}, {\"path\": \"Assets/...\"}, or {\"instanceID\": 123}. "
-        "Use manage_asset action=search filterType=Prefab to list prefabs."
+        "Use manage_asset action=search filterType=Prefab to list prefabs. "
+        "Performance tip: for save_prefab_stage, pass refresh=false to skip the trailing AssetDatabase.Refresh() (often ~1s on large projects); SaveAssets() still runs so dirty assets are flushed. Call refresh_unity yourself when you actually need the asset database to reimport."
     ),
     annotations=ToolAnnotations(
         title="Manage Prefabs",
@@ -78,6 +79,7 @@ async def manage_prefabs(
     create_child: Annotated[dict[str, Any] | list[dict[str, Any]], "Create child GameObject(s) in the prefab. Single object or array of objects, each with: name (required), parent (optional, defaults to target), source_prefab_path (optional: asset path to instantiate as nested prefab, e.g. 'Assets/Prefabs/Bullet.prefab'), primitive_type (optional: Cube, Sphere, Capsule, Cylinder, Plane, Quad), position, rotation, scale, components_to_add, tag, layer, set_active. source_prefab_path and primitive_type are mutually exclusive."] | None = None,
     delete_child: Annotated[str | list[str], "Child name(s) or path(s) to remove from the prefab. Supports single string or array for batch deletion (e.g. 'Child1' or ['Child1', 'Child1/Grandchild'])."] | None = None,
     component_properties: Annotated[dict[str, dict[str, Any]], "Set properties on existing components in modify_contents. Keys are component type names, values are dicts of property name to value. Example: {\"Rigidbody\": {\"mass\": 5.0}, \"MyScript\": {\"health\": 100}}. Supports object references via {\"guid\": \"...\"}, {\"path\": \"Assets/...\"}, or {\"instanceID\": 123}. For Sprite sub-assets: {\"guid\": \"...\", \"spriteName\": \"<name>\"}. Single-sprite textures auto-resolve."] | None = None,
+    refresh: Annotated[bool, "For save_prefab_stage: run AssetDatabase.Refresh() after writing the prefab (default true). Set false to skip the ~1s trailing import; SaveAssets() still runs so dirty assets are flushed. Call refresh_unity yourself when needed."] | None = None,
 ) -> dict[str, Any]:
     # Back-compat: map 'name' → 'target' for create_from_gameobject (Unity accepts both)
     if action == "create_from_gameobject" and target is None and name is not None:
@@ -198,6 +200,10 @@ def normalize_child_params(child: Any, index: int | None = None) -> tuple[dict |
         if delete_child is not None:
             params["deleteChild"] = delete_child
 
+        refresh_val = coerce_bool(refresh)
+        if refresh_val is not None:
+            params["refresh"] = refresh_val
+
         # Send command to Unity
         response = await send_with_unity_instance(
             async_send_command_with_retry, unity_instance, "manage_prefabs", params