WIP: Generalize implementation to treat non-Hermitian models #161
thchrAnnotations
5 errors and 1 warning
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build
Process completed with exit code 1.
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build:
../../../.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/nonhermitian.md:24-36
```@example hatano-nelson¨
ptbm = tbm([0.9, 1.1]) # a model with 0.9 hopping amplitude to right, 1.1 to the left
using Brillouin, GLMakie
kp = irrfbz_path(1, directbasis(1, 1)) # a k-path in plane group 1
kpi = interpolate(kp, 500) # interpolated over 500 points
Es = spectrum(ptbm, kpi)
Es_re = sort(real.(Es); dims=2)
Es_im = sort(imag.(Es); dims=2)
using GLMakie
plot(kpi, Es_re, Es_im; color=[:blue, :red])
```
exception =
UndefVarError: `tbm` not defined in `Main.var"__atexample__named__hatano-nelson¨"`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ nonhermitian.md:25
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/nonhermitian.md:19-21
```@example hatano-nelson
tb_hamiltonian(cbr, [[1]], HERMITIAN)
```
exception =
UndefVarError: `tb_hamiltonian` not defined in `Main.var"__atexample__named__hatano-nelson"`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name also exists in SymmetricTightBinding.
Stacktrace:
[1] top-level scope
@ nonhermitian.md:20
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/nonhermitian.md:10-15
```@example hatano-nelson
brs = calc_bandreps(1, 1) # EBRs in plane group 1, with time-reversal symmetry
pin_free!(brs, [1=>[0]]) # the 1a Wyckoff position in plane group 1 has a free parameter: set to 0 for definiteness
cbr = @composite brs[1] # single-site model
tbm = tb_hamiltonian(cbr, [[1]], NONHERMITIAN) # nearest neigbor hoppings
```
exception =
UndefVarError: `calc_bandreps` not defined in `Main.var"__atexample__named__hatano-nelson"`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name also exists in Crystalline.
Stacktrace:
[1] top-level scope
@ nonhermitian.md:11
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/AXNMp/src/expander_pipeline.jl:877
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build
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