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Merge pull request #445 from DARMA-tasking/develop
Update master from develop
2 parents 99a929f + e38ea38 commit ed4361d

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‎.env‎

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REPO=lifflander1/lbaf
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BASE=python:3.8-slim-buster

‎.github/workflows/action-git-diff-check.yml‎

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name: PR checks (git --check)
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on: pull_request
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jobs:
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check:
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name: Run git check
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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ref: ${{ github.event.pull_request.head.sha }}
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- name: Fetch base_ref HEAD
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run: git fetch --depth=1 origin +refs/heads/${{github.base_ref}}:refs/remotes/origin/${{github.base_ref}}
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- name: Display base sha
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shell: bash
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run: echo "${{ github.event.pull_request.base.sha }}"
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- uses: joel-coffman/action-git-diff-check@0.1
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with:
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revision: ${{ github.event.pull_request.base.sha }}

‎.github/workflows/build-and-publish-to-pypi.yml‎

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name: Publish Python package to PyPi
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on: push
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jobs:
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build-n-publish:
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name: Build and publish Python Package to PyPi
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python 3.8
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uses: actions/setup-python@v4
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with:
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python-version: 3.8
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- name: Install build
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run: |
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python -m pip install build --user
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- name: Build a binary wheel and a source tarball
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run: |
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python -m build --sdist --wheel --outdir dist/ .
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- name: Publish package
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if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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user: __token__
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password: ${{ secrets.PYPI_API_TOKEN }}
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verbose: true
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print-hash: true

‎.github/workflows/check-commit-format.yml‎

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name: PR checks (commit formatting)
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on: pull_request
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jobs:
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check:
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name: Check commit message format
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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ref: ${{ github.event.pull_request.head.sha }}
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- name: Fetch base_ref HEAD
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run: git fetch origin +refs/heads/${{github.base_ref}}:refs/remotes/origin/${{github.base_ref}}
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- name: Display base sha
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shell: bash
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run: echo "${{ github.event.pull_request.base.sha }}"
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- uses: DARMA-tasking/check-commit-format@master
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with:
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revision: ${{ github.event.pull_request.base.sha }}

‎.github/workflows/check-pr-fixes-issue.yml‎

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name: PR checks (PR description format)
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on:
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pull_request:
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types: [opened, edited, reopened, synchronize]
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jobs:
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check:
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name: Check PR description format
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runs-on: ubuntu-latest
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steps:
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- uses: DARMA-tasking/check-pr-fixes-issue@master
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with:
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pr_branch: ${{ github.head_ref }}
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pr_title: ${{ github.event.pull_request.title }}
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pr_description: ${{ github.event.pull_request.body }}

‎.github/workflows/code-quality.yml‎

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name: Code Quality (Tests, Linting, Coverage)
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on: push
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concurrency:
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group: CI-${{ github.head_ref }}
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cancel-in-progress: true
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jobs:
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code-quality:
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continue-on-error: false
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strategy:
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max-parallel: 10
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fail-fast: false
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matrix:
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os: [ubuntu-latest]
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python-version: ['3.8', '3.9']
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runs-on: ${{ matrix.os }}
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env:
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deploy_badges_src_branch: develop
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deploy_badges_dst_branch: deploy-badges
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steps:
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- uses: actions/checkout@v3
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- name: Install packages
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run: |
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sudo apt-get update -y
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sudo apt-get install -y git xvfb
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- name: Python Setup
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uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install -r requirements.txt
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pip install tox-gh-actions
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- name: Register Github Actions Problem matchers (pylint)
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run: |
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echo "::add-matcher::.github/workflows/matchers/pylint.json"
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- name: Running Tests, Pylint and Coverage using TOX
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id: run_tox
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run: |
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tox
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if [ -e "./artifacts/pylint.txt" ]; then PYLINT_REPORT_EXISTS="true"; else PYLINT_REPORT_EXISTS="false"; fi
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echo "pylint_report_exists=$PYLINT_REPORT_EXISTS" >> $GITHUB_OUTPUT
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if [ -e "./artifacts/coverage.txt" ]; then COVERAGE_REPORT_EXISTS="true"; else COVERAGE_REPORT_EXISTS="false"; fi
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echo "coverage_report_exists=$COVERAGE_REPORT_EXISTS" >> $GITHUB_OUTPUT
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- name: Report Test results
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uses: phoenix-actions/test-reporting@v12
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if: success() || failure()
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with:
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name: Tests report (${{ matrix.os }}, ${{ matrix.python-version }})
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path: artifacts/unittest/reports/TEST-*.xml
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reporter: java-junit
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output-to: step-summary
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- name: Upload pylint artifact
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if: |
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steps.run_tox.outputs.pylint_report_exists == 'true'
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uses: actions/upload-artifact@v3
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with:
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name: pylint
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path: artifacts/pylint.txt
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retention-days: 1
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- name: Upload coverage artifact
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if: |
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steps.run_tox.outputs.coverage_report_exists == 'true'
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uses: actions/upload-artifact@v3
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with:
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name: coverage
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path: artifacts/coverage.txt
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retention-days: 1
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- name: Create Pylint badge
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if: |
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github.ref_name == env.deploy_badges_src_branch &&
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steps.run_tox.outputs.pylint_report_exists == 'true'
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run: |
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mkdir -p badges
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PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./artifacts/pylint.txt)
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anybadge --label=Pylint --file=badges/pylint.svg --value=$PYLINT_SCORE 2=red 4=orange 8=yellow 10=green
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- name: Create Coverage badge
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if: |
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github.ref_name == env.deploy_badges_src_branch &&
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steps.run_tox.outputs.coverage_report_exists == 'true'
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run: |
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mkdir -p badges
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COVERAGE_SCORE=$(sed -n '/TOTAL/,/%/p' artifacts/coverage.txt | rev | cut -d" " -f1 | rev | tr -d % )
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anybadge --label=Coverage --file=badges/coverage.svg --value=$COVERAGE_SCORE coverage
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- name: Deploy badges
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uses: JamesIves/github-pages-deploy-action@v4
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if: github.ref_name == env.deploy_badges_src_branch &&
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(steps.run_tox.outputs.coverage_report_exists == 'true' || steps.run_tox.outputs.pylint_report_exists == 'true')
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with:
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branch: ${{ env.deploy_badges_dst_branch }}
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folder: ./badges
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clean: false
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commit-message: ${{ github.event.head_commit.message }}

‎.github/workflows/deploy_docs.yml‎

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name: Deploy docs
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on:
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push:
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branches: [ '297-add-automated-generated-documentation-from-LBAF' ]
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jobs:
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build-and-deploy-docs:
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runs-on: ubuntu-latest
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env:
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project-directory: /home/runner/work/LB-analysis-framework/LB-analysis-framework
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docs-directory: /home/runner/work/LB-analysis-framework/LB-analysis-framework/docs
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docs-output: /home/runner/work/LB-analysis-framework/LB-analysis-framework/docs/output
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docs-generator: /home/runner/work/LB-analysis-framework/LB-analysis-framework/m.css/documentation
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python-version: '3.8'
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steps:
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- uses: actions/checkout@v3
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- name: Set up Python ${{ env.python-version }}
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uses: actions/setup-python@v4
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with:
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python-version: ${{ env.python-version }}
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architecture: 'x64'
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- name: Install Python dependencies
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run: |
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python -m pip install --upgrade pip
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pip install -r requirements.txt
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pip3 install docutils jinja2 pygments
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- name: Clone documentation generator
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working-directory: ${{ env.project-directory }}
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run: |
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git clone https://github.com/mosra/m.css.git
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- name: Build documentation
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working-directory: ${{ env.docs-generator }}
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run: |
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python python.py ${{ env.docs-directory }}/docs_config.py
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# .nojekyll file is needed for GitHub Pages to know it's getting a ready webpage
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# and there is no need to generate anything
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- name: Generate nojekyll file
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working-directory: ${{ env.docs-output }}
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run: touch .nojekyll
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# This action moves the content of `generated_docs` to the `deploy-doc-site` branch
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- name: Deploy docs
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uses: JamesIves/github-pages-deploy-action@v4
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with:
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branch: deploy-doc-site
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folder: ${{ env.docs-output }}
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clean: true

‎.github/workflows/find-trailing-whitespace.yml‎

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name: PR checks (trailing whitespace)
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on: pull_request
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jobs:
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check:
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name: Find Trailing Whitespace
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: DARMA-tasking/find-trailing-whitespace@master
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with:
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exclude: "doc" # ; separated path to exclude

‎.github/workflows/find-unsigned-commits.yml‎

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name: PR checks (unsigned commits)
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on:
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pull_request
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jobs:
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check:
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name: Check if there are any unsigned commits
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runs-on: ubuntu-latest
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steps:
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- uses: DARMA-tasking/find-unsigned-commits@master
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with:
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repo_owner: ${{ github.event.repository.owner.login }}
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repo_name: ${{ github.event.repository.name }}
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pr_number: ${{ github.event.pull_request.number }}

‎.github/workflows/matchers/pylint.json‎

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{
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"problemMatcher": [
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{
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"owner": "pylint-error",
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"severity": "error",
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"pattern": [
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{
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"regexp": "^(.+):(\\d+):(\\d+):\\s([FE]\\d{4}):\\s(.+)$",
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"file": 1,
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"line": 2,
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"column": 3,
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"message": 5,
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"code": 4
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}
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]
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},
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{
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"owner": "pylint-warning",
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"severity": "warning",
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"pattern": [
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{
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"regexp": "^(.+):(\\d+):(\\d+):\\s([W]\\d{4}):\\s(.+)$",
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"file": 1,
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"line": 2,
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"column": 3,
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"message": 5,
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"code": 4
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}
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]
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},
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{
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"owner": "pylint-notice",
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"severity": "notice",
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"pattern": [
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{
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"regexp": "^(.+):(\\d+):(\\d+):\\s([CR]\\d{4}):\\s(.+)$",
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"file": 1,
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"line": 2,
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"column": 3,
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"message": 5,
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"code": 4
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}
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]
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}
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]
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}

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