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1 parent a429db8 commit 2bfb9d3Copy full SHA for 2bfb9d3
3 files changed
.Rbuildignore
@@ -33,6 +33,8 @@
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# testthat
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^tests/testthat/Rplots.pdf$
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+^tests/testthat/.*\.png$
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+^tests/testthat/.*\.html$
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# vignettes/
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^vignettes/commbine.sh
DESCRIPTION
@@ -3,7 +3,14 @@ Type: Package
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Title: Deconvolute Mixed Genomes with Unknown Proportions
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Version: 0.4.2
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Authors@R: c(
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- person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="joe.zhu@well.ox.ac.uk")
+ person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="joe.zhu@well.ox.ac.uk"),
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+ person('Jacob', 'Almagro-Garcia', role=c('aut', 'cph')),
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+ person('Gil', 'McVean', role=c('aut', 'cph')),
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+ person('University of Oxford', '', role=c('cph')),
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+ person('Yinghan', 'Liu', role=c('ctb')),
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+ person('CodeCogs', 'Zyba Ltd', role=c('com', "cph")),
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+ person('Deepak', 'Bandyopadhyay', role=c('com', "cph")),
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+ person('Lutz', 'Kettner', role=c('com', "cph"))
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)
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Description: Traditional phasing programs are limited to diploid organisms.
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Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo
src/r_random_generator.h
@@ -2,9 +2,11 @@
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* dEploid is used for deconvoluting Plasmodium falciparum genome from
* mix-infected patient sample.
*
- * Copyright (C) 2016, Sha (Joe) Zhu, Jacob Almagro and Prof. Gil McVean
+ * Copyright (C) 2016-2017 University of Oxford
- * This file is part of dEploid.
+ * Author: Sha (Joe) Zhu
+ *
+ * This file is part of DEploid-r.
* dEploid is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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