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prabhatkc
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typo correction in readme
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README.rst

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@@ -80,21 +80,21 @@ Usage
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[--anaRing] [--rNx RNX] [--rNy RNY] --in-dtype IN_DTYPE [--save-patched-subplots] [--apply-bm3d] [--mtf-space]
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[--dx DX] [--ht HT] [--windowing WINDOWING] [--remove-ref-noise] [--img-y-padding]
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sFRC analysis between image pairs from DL(or Reg)- & reference-based methods to identify hallucinations
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sFRC analysis between image pairs from DL(or IRT)- & reference-based methods to detect hallucinations
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arguments:
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-h, --help show this help message and exit
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--input-folder directory name containing images.
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--output-folder output folder to save bounding box-based hallucinated labels on DL/Reg & reference image pairs, and sFRC plots.
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--output-folder output folder to save bounding box-based hallucinated labels on DL/IRT & reference image pairs, and sFRC plots.
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--patch-size p96 or p64 or 48 or p32 to indicate patch sizes for the sFRC analysis. Change padding option in main.py for a
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different patch size.
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--random_N performs sfrc calculation on randomly selected 16 complimentary images from DL/Reg - Reference folders.
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--random_N performs sfrc calculation on randomly selected 16 complimentary images from DL/IRT - Reference folders.
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For more info refer to in-built options in main.py.
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--input-gen-folder folder name containing DL or regularization method-based outputs.
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--target-gen-folder folder name containing reference method-based outputs.
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--img-format image format for input and target images. Dicom/raw/tif/png? To add a new image format read function look
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inside the function partition_read_n_sfrc_plot_n_calc in file mpi_utils.py.
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--multi-patients if there are multiple-subfolders related to different parents.
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--multi-patients if there are multiple-subfolders related to different patients.
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--remove-edge-padding remove patches at the edges of images when mod(img size, patch size) != 0.
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--apply-hann apply hanning filter before the frc calculation.
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--frc-threshold frc threshold to determine correlation cut-off between the 2 methods. This patch-based FRC analysis
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DEMO execution of sFRC
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----------------------------------------------------------
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The example codes below show how to run sfrc by using data from DL/Reg methods and their reference counterparts used in the `sFRC paper <https://doi.org/10.36227/techrxiv.171259560.02243347/v2>`_.
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The example codes below show how to run sfrc by using data from DL/IRT methods and their reference counterparts used in the `sFRC paper <https://doi.org/10.36227/techrxiv.171259560.02243347/v2>`_.
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Run the codes below. Then accordingly change input paths and sfrc parameters for your application.
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1. sFRC on SRGAN-based CT upsampled (x4) images

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