Multiplot fix

Author: Dom Laetsch

blobtools

@@ -24,7 +24,7 @@ from docopt import docopt
 if __name__ == '__main__':
     main_dir = join(dirname(__file__), '')
     args = docopt(__doc__,
-                  version='version 0.9.4',
+                  version='version 0.9.6',
                   options_first=True)
     #print(args)
 

lib/BtCore.py

@@ -147,8 +147,8 @@ def getPlotData(self, rank, min_length, hide_nohits, taxrule, c_index, catcolour
                                     'span_visible' : 0,
                                     }
                 if len(cov_libs) > 1:
-                    data_dict[group]['covs']['sum'] = []
-                    data_dict[group]['reads_mapped']['sum'] = 0
+                    data_dict[group]['covs']['cov_sum'] = []
+                    data_dict[group]['reads_mapped']['cov_sum'] = 0
 
             if ((hide_nohits) and group == 'no-hit') or length < min_length: # hidden
                 data_dict[group]['count_hidden'] = data_dict[group].get('count_hidden', 0) + 1
@@ -177,15 +177,20 @@ def getPlotData(self, rank, min_length, hide_nohits, taxrule, c_index, catcolour
 
             if len(cov_libs) > 1:
                 cov_sum = cov_sum if cov_sum > 0.02 else 0.02
-                data_dict[group]['covs']['sum'].append(cov_sum)
+                data_dict[group]['covs']['cov_sum'].append(cov_sum)
                 if cov > max_cov:
                     max_cov = cov
                 if (reads_mapped_sum):
-                    data_dict[group]['reads_mapped']['sum'] += reads_mapped_sum
+                    data_dict[group]['reads_mapped']['cov_sum'] += reads_mapped_sum
 
             data_dict[group]['count'] = data_dict[group].get('count', 0) + 1
             data_dict[group]['span'] = data_dict[group].get('span', 0) + int(length)
 
+        if len(cov_libs) > 1:
+            cov_libs.append('cov_sum')
+            for cov_lib, data in self.covLibs.items():
+                cov_libs_reads_total['cov_sum'] = cov_libs_reads_total.get('cov_sum', 0) + data['reads_total'] 
+
         return data_dict, max_cov, cov_libs, cov_libs_reads_total
 
     def addCovLib(self, covLib):

lib/BtPlot.py

@@ -225,7 +225,6 @@ def write_stats(self):
 
     def compute_stats(self):
         stats = {}
-        
         for label in self.labels:
             stats[label] = {
                             'gc' : [],