fixup! Parquet to BigQuery import for GCP-backed AnVIL snapshots (#6355)

Author: nadove-ucsc

UPGRADING.rst

@@ -25,8 +25,11 @@ have too many entries in this file.
 
 The ``mksrc`` function has been updated to include a parameter specifying the
 type of each source (either "parquet" or "bigquery"). For each of your personal
-deployments, specify "bigquery" for all sources. As always, use the sandbox
-deployment's ``environment.py`` as a model when upgrading personal deployments.
+deployments, specify "bigquery" for all sources, except for source
+``ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732`` for any personal deployments
+colocated with ``anvildev``, which should use "parquet". As always, use the
+sandbox deployment's ``environment.py`` as a model when upgrading personal
+deployments.
 
 
 #6446 Base image of Azul image is not pinned to digest

deployments/anvilbox/environment.py

@@ -73,7 +73,7 @@ def mkdict(previous_catalog: dict[str, str],
 
 
 anvil_sources = mkdict({}, 3, mkdelta([
-    mksrc('bigquery', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
+    mksrc('parquet', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
     mksrc('bigquery', 'datarepo-dev-42c70e6a', 'ANVIL_CCDG_Sample_1_20230228_ANV5_202302281520', 28),
     mksrc('bigquery', 'datarepo-dev-97ad270b', 'ANVIL_CMG_Sample_1_20230225_ANV5_202302281509', 25)
 ]))

deployments/anvildev/environment.py

@@ -64,7 +64,7 @@ def mkdict(previous_catalog: dict[str, str],
 
 
 anvil_sources = mkdict({}, 3, mkdelta([
-    mksrc('bigquery', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
+    mksrc('parquet', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
     mksrc('bigquery', 'datarepo-dev-42c70e6a', 'ANVIL_CCDG_Sample_1_20230228_ANV5_202302281520', 28),
     mksrc('bigquery', 'datarepo-dev-97ad270b', 'ANVIL_CMG_Sample_1_20230225_ANV5_202302281509', 25)
 ]))

deployments/tempdev/environment.py

@@ -64,7 +64,7 @@ def mkdict(previous_catalog: dict[str, str],
 
 
 anvil_sources = mkdict({}, 3, mkdelta([
-    mksrc('bigquery', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
+    mksrc('parquet', 'datarepo-dev-e53e74aa', 'ANVIL_1000G_2019_Dev_20230609_ANV5_202306121732', 6804),
     mksrc('bigquery', 'datarepo-dev-42c70e6a', 'ANVIL_CCDG_Sample_1_20230228_ANV5_202302281520', 28),
     mksrc('bigquery', 'datarepo-dev-97ad270b', 'ANVIL_CMG_Sample_1_20230225_ANV5_202302281509', 25)
 ]))