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[TSPS-582 + TSPS-525] Update Imputation documentation links and Helpful Tips (#5392)
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config/staging.json

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@@ -20,6 +20,7 @@
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"rawlsUrlRoot": "https://rawls.dsde-staging.broadinstitute.org",
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"samUrlRoot": "https://sam.dsde-staging.broadinstitute.org",
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"shibbolethUrlRoot": "https://broad-shibboleth-prod.appspot.com/dev",
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"teaspoonsUrlRoot": "https://teaspoons.dsde-staging.broadinstitute.org",
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"workspaceManagerUrlRoot": "https://workspace.dsde-staging.broadinstitute.org",
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"terraDockerVersionsFile": "terra-docker-versions-staging.json",
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"terraDockerImageBucket": "terra-docker-image-documentation-staging",

src/pages/scientificServices/pipelines/views/About.tsx

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@@ -51,16 +51,20 @@ export const About = () => {
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<h2 style={{ marginTop: '2rem' }}>User Documentation</h2>
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<div style={{ marginTop: '1rem' }}>
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<a
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href='/#pipelines/imputation'
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href='https://broadscientificservices.zendesk.com/hc/en-us/sections/39901025462171'
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target='_blank'
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style={{ color: '#46A3E9', textDecoration: 'underline', fontWeight: 'bold' }}
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rel='noreferrer'
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>
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Get Started
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</a>
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</div>
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<div style={{ marginTop: '1rem' }}>
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<a
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href='/#pipelines/imputation'
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target='_blank'
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href='https://broadscientificservices.zendesk.com/hc/en-us/articles/39901941351323'
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style={{ color: '#46A3E9', textDecoration: 'underline', fontWeight: 'bold' }}
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rel='noreferrer'
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>
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About this Service
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</a>

src/pages/scientificServices/pipelines/widgets/HelpfulTipsWidget.tsx

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@@ -7,10 +7,24 @@ export const PIPELINE_TIPS: Record<string, { id: string; content: ReactNode }[]>
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// If a pipeline doesn't have any tips, this widget won't be rendered at all.
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// This supports ReactNodes in case you want to include links or other non-string elements in the tips.
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array_imputation: [
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{ id: 'vcf-valid', content: 'Ensure that your file is a valid vcf file' },
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{ id: 'grch38', content: 'VCFs must be generated from GRCh38/hg38' },
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{ id: 'quota-check', content: 'Ensure your multi-sample file contains no more than your remaining quota.' },
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{ id: 'format-guidelines', content: 'More guidelines for data formatting' },
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{ id: 'quota-check', content: 'Ensure your multi-sample file contains no more samples than your remaining quota' },
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{
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id: 'format-guidelines',
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content: (
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<>
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View{' '}
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<a
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href='https://broadscientificservices.zendesk.com/hc/en-us/articles/40161675448859'
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target='_blank'
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style={{ color: '#46A3E9', textDecoration: 'underline', fontWeight: 'bold' }}
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rel='noreferrer'
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>
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formatting guidelines
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</a>{' '}
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for input VCF files
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</>
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),
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},
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],
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};
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