Merge pull request #611 from dkuegler/fix/requirements

Bump versions to those in docker container (stable)

Author: dkuegler

requirements.cpu.txt

@@ -1,46 +1,46 @@
 #
-# This file is autogenerated by kueglerd from deepmi/fastsurfer:cpu-v2.3.0
+# This file is autogenerated by kueglerd from deepmi/fastsurfer:cpu-v2.3.3
 # by the following command from FastSurfer:
 #
-#    ./requirements.cpu.txt deepmi/fastsurfer:cpu-v2.3.0
+#    ./requirements.cpu.txt deepmi/fastsurfer:cpu-v2.3.3
 #
 # Which ran the following command:
-#    docker run --rm -u <user_id>:<group_id> --entrypoint /bin/bash deepmi/fastsurfer:cpu-v2.3.0 -c 'python --version && pip list --format=freeze --no-color --disable-pip-version-check --no-input'
+#    docker run --rm -u <user_id>:<group_id> --entrypoint /bin/bash deepmi/fastsurfer:cpu-v2.3.3 -c 'python --version && pip list --format=freeze --no-color --disable-pip-version-check --no-input'
 #
 #
-# Image was configured for cpu using python version 3.10.14
+# Image was configured for cpu using python version 3.10.15
 #
 --extra-index-url https://download.pytorch.org/whl/cpu
 
-# Python 3.10.14
+# Python 3.10.15
 absl-py==2.1.0
 Brotli==1.1.0
 cached-property==1.5.2
-certifi==2024.7.4
-cffi==1.17.0
+certifi==2024.8.30
+cffi==1.17.1
 charset-normalizer==3.3.2
 click==8.1.7
 colorama==0.4.6
-contourpy==1.2.1
+contourpy==1.3.0
 cycler==0.12.1
 Deprecated==1.2.14
-filelock==3.15.4
-fonttools==4.53.1
-fsspec==2024.6.1
-grpcio==1.62.2
+filelock==3.16.1
+fonttools==4.54.1
+fsspec==2024.10.0
+grpcio==1.65.5
 h2==4.1.0
 h5py==3.11.0
 hpack==4.0.0
-humanize==4.10.0
+humanize==4.11.0
 hyperframe==6.0.1
-idna==3.8
+idna==3.10
 imagecodecs==2024.6.1
 imageio==2.35.1
-importlib_metadata==8.4.0
-importlib_resources==6.4.4
+importlib_metadata==8.5.0
+importlib_resources==6.4.5
 Jinja2==3.1.4
 joblib==1.4.2
-kiwisolver==1.4.5
+kiwisolver==1.4.7
 lapy==1.1.0
 lazy_loader==0.4
 Markdown==3.6
@@ -56,49 +56,49 @@ numpy==1.26.4
 packaging==24.1
 pandas==2.2.2
 pillow==10.4.0
-pip==24.2
-plotly==5.23.0
-protobuf==4.25.3
+pip==24.3.1
+plotly==5.24.1
+protobuf==5.27.5
 psutil==6.0.0
 pycparser==2.22
 Pygments==2.18.0
 pyparsing==3.1.4
-PySide6==6.7.2
+PySide6==6.7.3
 PySocks==1.7.1
 python-dateutil==2.9.0
-pytz==2024.1
+pytz==2024.2
 PyWavelets==1.7.0
 PyYAML==6.0.2
 requests==2.32.3
-rich==13.8.0
+rich==13.9.4
 scikit-image==0.24.0
 scikit-learn==1.5.1
 scikit-sparse==0.4.14
 scipy==1.14.1
 setuptools==72.2.0
 shellingham==1.5.4
-shiboken6==6.7.2
+shiboken6==6.7.3
 SimpleITK==2.4.0
 six==1.16.0
-sympy==1.13.2
+sympy==1.13.3
 tenacity==9.0.0
 tensorboard==2.17.1
 tensorboard-data-server==0.7.0
 threadpoolctl==3.5.0
-tifffile==2024.8.24
+tifffile==2024.9.20
 torch==2.4.0+cpu
 torchio==0.19.9
 torchvision==0.19.0+cpu
 tornado==6.4.1
 tqdm==4.66.5
-typer==0.12.5
+typer==0.13.0
 typing_extensions==4.12.2
-tzdata==2024.1
+tzdata==2024.2
 unicodedata2==15.1.0
-urllib3==2.2.2
+urllib3==2.2.3
 Werkzeug==3.0.4
 wheel==0.44.0
 wrapt==1.16.0
 yacs==0.1.8
-zipp==3.20.0
+zipp==3.20.2
 zstandard==0.23.0

requirements.txt

@@ -1,46 +1,46 @@
 #
-# This file is autogenerated by kueglerd from deepmi/fastsurfer:cu124-v2.3.0
+# This file is autogenerated by kueglerd from deepmi/fastsurfer:cuda-v2.3.3
 # by the following command from FastSurfer:
 #
-#    ./requirements.txt deepmi/fastsurfer:cu124-v2.3.0
+#    ./requirements.txt deepmi/fastsurfer:cuda-v2.3.3
 #
 # Which ran the following command:
-#    docker run --rm -u <user_id>:<group_id> --entrypoint /bin/bash deepmi/fastsurfer:cu124-v2.3.0 -c 'python --version && pip list --format=freeze --no-color --disable-pip-version-check --no-input'
+#    docker run --rm -u <user_id>:<group_id> --entrypoint /bin/bash deepmi/fastsurfer:cuda-v2.3.3 -c 'python --version && pip list --format=freeze --no-color --disable-pip-version-check --no-input'
 #
 #
-# Image was configured for cu124 using python version 3.10.14
+# Image was configured for cu124 using python version 3.10.15
 #
 --extra-index-url https://download.pytorch.org/whl/cu124
 
-# Python 3.10.14
+# Python 3.10.15
 absl-py==2.1.0
 Brotli==1.1.0
 cached-property==1.5.2
-certifi==2024.7.4
-cffi==1.17.0
+certifi==2024.8.30
+cffi==1.17.1
 charset-normalizer==3.3.2
 click==8.1.7
 colorama==0.4.6
-contourpy==1.2.1
+contourpy==1.3.0
 cycler==0.12.1
 Deprecated==1.2.14
-filelock==3.15.4
-fonttools==4.53.1
-fsspec==2024.6.1
-grpcio==1.62.2
+filelock==3.16.1
+fonttools==4.54.1
+fsspec==2024.9.0
+grpcio==1.65.5
 h2==4.1.0
 h5py==3.11.0
 hpack==4.0.0
-humanize==4.10.0
+humanize==4.11.0
 hyperframe==6.0.1
-idna==3.8
+idna==3.10
 imagecodecs==2024.6.1
 imageio==2.35.1
-importlib_metadata==8.4.0
-importlib_resources==6.4.4
+importlib_metadata==8.5.0
+importlib_resources==6.4.5
 Jinja2==3.1.4
 joblib==1.4.2
-kiwisolver==1.4.5
+kiwisolver==1.4.7
 lapy==1.1.0
 lazy_loader==0.4
 Markdown==3.6
@@ -69,35 +69,35 @@ packaging==24.1
 pandas==2.2.2
 pillow==10.4.0
 pip==24.2
-plotly==5.23.0
-protobuf==4.25.3
+plotly==5.24.1
+protobuf==5.27.5
 psutil==6.0.0
 pycparser==2.22
 Pygments==2.18.0
 pyparsing==3.1.4
-PySide6==6.7.2
+PySide6==6.7.3
 PySocks==1.7.1
 python-dateutil==2.9.0
-pytz==2024.1
+pytz==2024.2
 PyWavelets==1.7.0
 PyYAML==6.0.2
 requests==2.32.3
-rich==13.7.1
+rich==13.9.2
 scikit-image==0.24.0
 scikit-learn==1.5.1
 scikit-sparse==0.4.14
 scipy==1.14.1
 setuptools==72.2.0
 shellingham==1.5.4
-shiboken6==6.7.2
+shiboken6==6.7.3
 SimpleITK==2.4.0
 six==1.16.0
-sympy==1.13.2
+sympy==1.13.3
 tenacity==9.0.0
 tensorboard==2.17.1
 tensorboard-data-server==0.7.0
 threadpoolctl==3.5.0
-tifffile==2024.8.24
+tifffile==2024.9.20
 torch==2.4.0+cu124
 torchio==0.19.9
 torchvision==0.19.0+cu124
@@ -106,12 +106,12 @@ tqdm==4.66.5
 triton==3.0.0
 typer==0.12.5
 typing_extensions==4.12.2
-tzdata==2024.1
+tzdata==2024.2
 unicodedata2==15.1.0
-urllib3==2.2.2
+urllib3==2.2.3
 Werkzeug==3.0.4
 wheel==0.44.0
 wrapt==1.16.0
 yacs==0.1.8
-zipp==3.20.0
+zipp==3.20.2
 zstandard==0.23.0