Ipynb colab notebook: FastSurfer asegdkt segmentation failed

[razoralm]

I am testing your colab Notebook
Complete_FastSurfer_Tutorial.ipynb

The first step - 3 clicks
I want to do in with my MRI data (the samen .mgz package, 360 saggital T1 slices)

After running the ERROR is

 /content/fastsurfer//run_fastsurfer.sh: line 1096:  5931 Killed                  "${cmd[@]}"
ERROR: FastSurfer asegdkt segmentation failed.

[dkuegler]

Hello, thank you for creating an issue here.
Please share more of the logfile/console output.

It looks to me like the run was terminated, before it could finish "naturally". But it is unclear by what it was stopped.

[m-reuter]

For me the 3rd step (run_fastsurfer) works and reports the total volume of the segmentation. But then it get's stuck (wheel turns, I waited 9 minutes). Stopping the cell works and checking the final segmentation looks fine.