Merge pull request #801 from jessicavers/master

Optional argument for expand was changed

Author: nicwade

doc/source/tutorials/confluence/savu/savu_notes.rst

@@ -1,3 +1,5 @@
+:orphan:
+
 .. _savu_notes:
 
 Savu - notes on basic use

doc/source/tutorials/confluence/savu/savu_tutorial.rst

@@ -1,3 +1,5 @@
+:orphan:
+
 .. _savu_tutorial:
 
 Savu - tutorial on basic use

plugin_examples/example_median_filter.py

@@ -29,11 +29,6 @@
 
 
 class ExampleMedianFilter(BaseFilter, CpuPlugin):
-    """
-    A plugin to filter each frame with a 3x3 median filter
-
-    :param kernel_size: Kernel size for the filter. Default: (1, 3, 3).
-    """
 
     def __init__(self):
         logging.debug("Starting Median Filter")

plugin_examples/example_median_filter_tools.py

@@ -0,0 +1,15 @@
+from savu.plugins.plugin_tools import PluginTools
+
+class ExampleMedianFilterTools(PluginTools):
+    """
+    A plugin to filter each frame with a 3x3 median filter
+    """
+
+    def define_parameters(self):
+        """
+        kernel_size:
+            visibility: basic
+            dtype: list[int]
+            description: Kernel size for the filter.
+            default:  [1, 3, 3]
+        """

plugin_examples/plugin_templates/general/plugin_template1_with_detailed_notes.py

@@ -110,5 +110,4 @@ def process_frames(self, data):
     def post_process(self):
         # This method is called once after all processing has completed
         # (after an MPI barrier).
-        pass
-
+        pass

scripts/config_generator/arg_parsers.py

@@ -258,7 +258,7 @@ def _expand_arg_parser(args=None, doc=True):
     parser.add_argument('dim_view', nargs="?", default=False,
                         help=argparse.SUPPRESS)
     expand_off_str = "Turn off the expand view"
-    parser.add_argument("-o", "--off", action="store_true",
+    parser.add_argument("--off", action="store_true",
                         dest="off", help=expand_off_str, default=False)
     return __arg_parser(parser, args, "expand", doc)