Removed the wrong test function

Author: tieneupin

tests/cli/test_clem_align_and_merge_cli.py

@@ -2,30 +2,44 @@
 
 import subprocess
 import sys
+from pathlib import Path
 from unittest import mock
 
 from cryoemservices.cli import clem_align_and_merge
 
 
 @mock.patch("cryoemservices.wrappers.clem_align_and_merge.align_and_merge_stacks")
 def test_align_and_merge(mock_align_and_merge, tmp_path):
-    """Test that the cli runs the expected default args"""
+    """Test that the cli runs with all args provided"""
     (tmp_path / "file1").touch()
+    (tmp_path / "file2").touch()
 
     # Run the cli
     sys.argv = [
         "clem.align_and_merge",
         f"{tmp_path}/file1",
+        f"{tmp_path}/file2",
+        "--metadata",
+        "metadata.xml",
+        "--crop-to-n-frames",
+        "5",
+        "--align-self",
+        "enabled",
+        "--flatten",
+        "min",
+        "--align-across",
+        "enabled",
+        "--debug",
     ]
     clem_align_and_merge.run()
 
     mock_align_and_merge.assert_called_with(
-        images=[tmp_path / "file1"],
-        metadata=None,
-        crop_to_n_frames=None,
-        align_self="",
-        flatten="mean",
-        align_across="",
+        images=[tmp_path / "file1", tmp_path / "file2"],
+        metadata=Path("metadata.xml"),
+        crop_to_n_frames=5,
+        align_self="enabled",
+        flatten="min",
+        align_across="enabled",
     )