Merge pull request #70 from DiamondLightSource/fullpartests

adding a new directive

Author: dkazanc

httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml

@@ -0,0 +1,18 @@
+- method: standard_tomo
+  module_path: httomo.data.hdf.loaders
+- method: find_center_pc
+  module_path: httomolibgpu.recon.rotation
+- method: normalize
+  module_path: httomolibgpu.prep.normalize
+- method: remove_stripe_ti
+  module_path: httomolibgpu.prep.stripe
+- method: FBP3d_tomobar
+  module_path: httomolibgpu.recon.algorithm
+- method: data_resampler
+  module_path: httomolibgpu.misc.morph
+- method: calculate_stats
+  module_path: httomo.methods
+- method: rescale_to_int
+  module_path: httomolib.misc.rescale
+- method: save_to_images
+  module_path: httomolib.misc.images

httomo_backends/scripts/yaml_pipelines_generator.py

@@ -216,6 +216,17 @@ def yaml_pipelines_generator(
                     key="metadata_path",
                     comment="Provide an absolute path to the text file with distortion coefficients.",
                 )
+            elif "data_resampler" in method_name:
+                pipeline_full.yaml_set_comment_before_after_key(
+                    i,
+                    "--- Down/up sampling the data. --- ",
+                    indent=0,
+                )
+                pipeline_full += yaml_template_method
+                pipeline_full[i]["parameters"].yaml_add_eol_comment(
+                    key="newshape",
+                    comment="Provide a new shape for a 2D slice, e.g. [256, 256].",
+                )
             elif "sino_360_to_180" in method_name:
                 pipeline_full.yaml_set_comment_before_after_key(
                     i,