Merge pull request #105 from Leengit/build_and_publish

Enable publishing HistomicsDetect to PyPI as histomics_detect as GitHub release

Author: Leengit

.github/workflows/build-test-package.yml

@@ -0,0 +1,25 @@
+name: Build, test, package
+
+on: [push,pull_request]
+
+jobs:
+  build-n-publish:
+    name: Build and publish Python 🐍 distributions 📦 to PyPI
+    runs-on: ubuntu-20.04
+    steps:
+    - uses: actions/checkout@master
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.9
+    - name: Install pypa/build
+      run: >-
+        python -m pip install build --user
+    - name: Build a binary wheel and a source tarball
+      run: >-
+        python -m build --sdist --wheel --outdir dist/ .
+    - name: Publish distribution 📦 to PyPI
+      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
+      uses: pypa/gh-action-pypi-publish@master
+      with:
+        password: ${{ secrets.PYPI_API_TOKEN }}

histomics_detect/__init__.py

@@ -0,0 +1,9 @@
+"""A TensorFlow 2 package for cell detection"""
+
+__version__ = "0.0.1"
+
+"""
+
+This module detects cells using TensorFlow 2.
+
+"""

pyproject.toml

@@ -1,6 +1,35 @@
 [build-system]
-requires = [
-    "setuptools>=42",
-    "wheel"
+requires = ["flit_core >=3.4,<4"]
+build-backend = "flit_core.buildapi"
+
+[project]
+name = "histomics_detect"
+readme = "README.rst"
+requires-python = ">=3.6"
+authors = [{name = "Lee A. D. Cooper", email = "lee.cooper@northwestern.edu"}]
+maintainers = [{name = "Lee A. D. Cooper", email = "lee.cooper@northwestern.edu"}]
+keywords = ["histomics_detect", "HistomicsDetect"]
+classifiers=[
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: Apache Software License",
+    "Topic :: Scientific/Engineering :: Artificial Intelligence",
+    "Topic :: Scientific/Engineering :: Image Processing",
+    "Topic :: Scientific/Engineering :: Image Recognition",
 ]
-build-backend = "setuptools.build_meta"
+dependencies = [
+    "matplotlib",
+    "numpy",
+    "pandas",
+    "Pillow",
+    "pooch",
+    "pyyaml",
+    "scipy",
+    "tensorflow-gpu>=2.4",
+]
+dynamic = ["version", "description"]
+
+[project.urls]
+Source = "https://github.com/DigitalSlideArchive/HistomicsDetect"
+
+[project.scripts]
+flit = "flit:main"