Version 1.4.2

What's Changed

• Speed up item list updates. by @manthey in #258
• Add hooks to add details to annotation popovers. by @manthey in #260
• Add some missing endpoint scopes. by @manthey in #262
• Use folder metadata in metadata plots. by @manthey in #264
• Fix typo in girder-worker command invocation by @zachmullen in #268
• Update the handler for annotation size. by @manthey in #271
• Allow click to select a single element. by @manthey in #273
• Don't reload plotly if already present by @manthey in #274
• Allow selecting elements by polygon by @manthey in #275
• Fix a bug where elements wouldn't update immediately. by @manthey in #276
• Color annotations by metadata. by @manthey in #279
• Selecting annotations and draw mode are exclusive. by @manthey in #280
• Add select-by-group controls to the draw widget. by @manthey in #281
• Deactivate annotations when they are hidden. by @manthey in #282
• Deselect elements when they are hidden. by @manthey in #283
• Deselect elements on image transition. by @manthey in #284
• Don't change the color radio button needlessly. by @manthey in #285
• Prevent side panels from having horizontal scrollbars. by @manthey in #286

New Contributors

• @zachmullen made their first contribution in #265

Full Changelog: v1.4.1...v1.4.2

Version 1.4.1

What's Changed

• Minor tweak to panel zone css. by @manthey in #242
• Use open.read rather than download to access files in Girder. by @manthey in #244
• Optionally relax restricting downloads for small files. by @manthey in #247
• Improve metadata and annotation reference handling. by @manthey in #248
• Assetstore maintenance by @manthey in #250
• Pin tinycolor2 by @manthey in #256

Full Changelog: v1.4.0...v1.4.1

Version 1.4.0

What's Changed

• Add support for drawing polygon regions by @manthey in #126
• Update CI image. by @manthey in #131
• Ellipse and circle annotations by @manthey in #132
• Add pixelmap interactivity by @naglepuff in #130
• Set coordinates display z index. by @manthey in #133
• Add setuptools_scm to the tox requirements. by @manthey in #134
• Better clear tooltips. by @manthey in #136
• Add an endpoint to find a json config file. by @manthey in #138
• Explicitly order next and previous item buttons by @manthey in #139
• Add an option to remove annotation files after ingest. by @manthey in #144
• Don't close dialog when dragging outside of it by @mvandenburgh in #149
• Revert "Generalize the mousedown behavior for all modals" by @manthey in #151
• Documentation improvements by @mvandenburgh in #153
• Don't close dialog when dragging outside of it (take 2) by @mvandenburgh in #152
• Add keyboard shortcut to start/stop drawing annotation by @mvandenburgh in #154
• Add keyboard shortcuts to pick the style group by @mvandenburgh in #155
• Add keyboard shortcut for saving polygon/line annotations by @mvandenburgh in #157
• Set tabindex of all dialog buttons by @mvandenburgh in #158
• Fix create annotation keyboard shortcut bug by @mvandenburgh in #160
• Remove the json config route. by @manthey in #161
• Specify a background color for the brand in the title bar by @manthey in #162
• Add an endpoint to restart the system. by @manthey in #164
• Add an endpoint to allow admins to clean up old abandoned jobs. by @manthey in #165
• Handle annotation boolean operations by @manthey in #166
• Speed up adding annotation elements. by @manthey in #167
• Document some of the mouse and keyboard controls. by @manthey in #168
• Illustrate boolean operations. by @manthey in #169
• Improve aggregating groups. by @manthey in #170
• Fix an issue showing the metadata panel maximized. by @manthey in #171
• Refocus the main image after using the context menu. by @manthey in #172
• Reduce updates when modifying annotations. by @manthey in #173
• Replace the 'Open in Histomics UI' menu item with a button by @eagw in #175
• Create links from hierarchy widget to images in Histomics UI by @eagw in #176
• Make long image annotation label titles wrap properly by @eagw in #178
• Fix initial popover position. by @manthey in #179
• Reduce updates on zoom changes. by @manthey in #181
• Add feature to zoom to highlighted annotations in 'Interactive Mode' by @eagw in #180
• Add Vue component for editing Heatmap and Griddata annotation elements by @naglepuff in #182
• Add brush controls by @manthey in #184
• Update control documentation and brush function descriptions. by @manthey in #185
• Add some tests for the brush. by @manthey in #186
• Change the key bindings for changing brush size. by @manthey in #188
• Fix an issue when switching annotations and editing. by @manthey in #189
• Allow virtual folders to form resource paths by @manthey in #191
• Fix highlighting the active annotation. by @manthey in #192
• Use a screen-relative pixel tolerance. by @manthey in #194
• Pin vue and vue-template-compiler. by @manthey in #196
• Add element count for annotation/group combinations by @eagw in #198
• Add webapck alias for vue by @naglepuff in #205
• Speed up select by region by reducing backbone events. by @manthey in #206
• Add an endpoint to get default settings. by @manthey in #207
• Harden annotation spec test. by @manthey in #208
• Show color picker to the side by @naglepuff in #209
• Add dropdown to enable drawing shapes with fixed aspect ratios/sizes by @mvandenburgh in #197
• Add optional help button by @eagw in #203
• Add internal pixelmap count to annotation/group count by @eagw in #204
• Refactor how controls are found and modified. by @manthey in #213
• Don't show open in histomics icon in dialogs. by @manthey in #214
• Click buffer of 10px - missing annotations by @ds2268 in #210
• Fix some white-space issues. by @manthey in #219
• Allow flake8 to be an implied dependency. by @manthey in #220
• Add more descriptive element labels by @naglepuff in #216
• Better invalidate JS and CSS caches. by @manthey in #221
• Use new annotation creation access flag by @eagw in #222
• Fix issue with panel layout from new access flag use (PR #222) by @eagw in #223
• If an annotation element has a specified label, don't modify it. by @manthey in #224
• Generalize not closing modals when the mouse is dragged outside of it by @manthey in #227
• Support changing annotation groups based on a config file. by @manthey in #228
• Adjust based on proper value array length by @manthey in #229
• Reduce how often the new annotation button updates. by @manthey in #231
• Reduce how often the new annotation button updates by @manthey in #232
• Improve visual refresh speed during saves. by @manthey in #233
• Fix setting the default group in one spot. by @manthey in #234
• Add appropriate information for relative path parameters. by @manthey in #235
• Fix counts for some labeled groups. by @manthey in #237
• Harden heatmap dialog. by @manthey in #238
• Show annotation created and updated times and the annotation id. by @manthey in #239
• Harden not closing modals when the mouse is dragged outside of it by @manthey in #240
• Support annotation metadata by @manthey in #241

New Contributors

• @mvandenburgh made their first contribution in #149
• @eagw made their first contribution in #175
• @ds2268 made their first c...

Version 1.3.0

Features

• Add support for image overlays

Improvements

• Handle annotations with girderId references.

Version 1.2.1

Changes

• Better handle analysis extras_require

Version 1.2.0

Features

• Show job progress if the job emits it (#115)

Changes

• Make analysis an extras_require (#116)

Version 1.1.0

Features

• Support editing annotation elements (#100)
• Add a metadata plot panel (#101)

Improvements

• Handle metadata updates (#9)
• When changing the current image, reset the selected region (#96)
• Merge download parameters (#103)
• Adjust zoom control padding (#104)
• Add an endpoint to get the next and previous images in one call (#107)
• Use tile-frames for better frame browsing (#112)

Changes

• Default to using pagination in item lists (#110)

Bug Fixes

• Fix analysis panel not staying closed (#95)
• Fix restricting download endpoints (#98)
• Show the correct frame in the overview panel (#99)

Version 1.0.0

Official Girder 3 version.

Notes

• The is the last version supporting Python 2.7 and 3.5.

v1.0.0.dev0: Move to Girder 3.

Move HistomicsTK server components to this repo.

The default ui has moved from /histomicstk to /histomics.  Individual
deployments can mount this at other locations.

Because we now use the girder-3 branch of slicer_cli_web, the cli access
settings are no longer necessary.  The docker cli endpoints are only
present in slicer_cli_web.  Where appropriate, references have been
changed from HistomicsTK to Digital Slide Archive.

This removes the options to ingest from tcga-data.nci.nih.gov, as that
has not been served in a compatible manner in a long time.

Still needed:

- Add a test that includes using a docker CLI.  This will require
  appropriate infrastructure for starting girder_worker and running
  docker containers.

- Add a test to ensure that local paths are used within the CLI test.

- Add deployment to pypi on successful builds

- Migrate appropriate docs from HistomicsTK