Error in fanngo2gaf.R

[SantosRAC]

Hello @wkpalan , I hope you are doing well.

I am trying to run GOMAP singuarity for a plant species, Setaria viridis.

This is the beginning of my FASTA:

Sevir.4G009601.1.p pacid=40599082 transcript=Sevir.4G009601.1 locus=Sevir.4G009601 ID=Sevir.4G009601.1.v2.1 annot-version=v2.1
MGHSSQAKADQKRSSTAIDHALDTANPAVNHALAHRPCVINQA
>Sevir.4G125300.1.p pacid=40599083 transcript=Sevir.4G125300.1 locus=Sevir.4G125300 ID=Sevir.4G125300.1.v2.1 annot-version=v2.1
MDGGGGDLRSTIKKWNVIYPVYLNSKKTVAEGRRIAASKACPDPTCIEIADCCSHLKIPYAIELDKAYPRDFFQVGRVRV
QLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQESAPSSSASGSSKNTKGGKKKK
>Sevir.4G299300.1.p pacid=40599085 transcript=Sevir.4G299300.1 locus=Sevir.4G299300 ID=Sevir.4G299300.1.v2.1 annot-version=v2.1
MGNCASAINSFVQRGTRSSPSAAPGMSASRRTSSSATTGKLSTLSTSTFMPSTISGVSVDDDYPDGQILESPDLKIYTFA
ELKSATRSFRPETVLGEGGFGKVYKGWVDEKTLNPSRSSIGMVVAVKKLNPESVQGMEQWQSEVNFLGRISHPNLVKLLG
YCMDDNELLLVYEFMAKGSLENHLFRRGAVYEPLPWSLRLKILIGAARGLAFLHSSERQIIYRDFKASNILLDSHFNAKL
SDFGLAKHGPDGEESHVTTRVMGTYGYAAPEYVSTGHLYVKSDVYGFGVVLLEMISGLRALDPSRQNEKVNLVNWAKPLL

GOMAP crashed in the "run_fanngo based annotations" step:

I do not see the GAF file for fanngo. Before this step, three gafs are successfully generated in b.raw_gaf folder:

gaf/b.raw_gaf:
Sviridis_2_1.arabidopsis.gaf  Sviridis_2_1.Interproscan5.gaf  Sviridis_2_1.uniprot.gaf

System Details

• OS: Ubuntu
• Version: 22
• Memory Size: 8Gb
• singularity-ce version 3.11.4-jammy

I'm using cpus: 4 and mpi: False