diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..1bf7d0c --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,62 @@ +version: 2 +updates: + # JavaScript deps (Yarn or npm) — Dependabot uses the "npm" ecosystem for both. + - package-ecosystem: "npm" + directory: "/" + schedule: + interval: "weekly" + versioning-strategy: increase-if-necessary + assignees: + - "diogoribeiro7" + reviewers: + - "diogoribeiro7" + labels: + - "dependencies" + - "javascript" + # Optional: avoid noisy breaking bumps + # ignore: + # - dependency-name: "*" + # update-types: ["version-update:semver-major"] + # Optional: nice commit prefixes + # commit-message: + # prefix: "deps(npm)" + # prefix-development: "deps(dev-npm)" + + # Jekyll (Ruby/Bundler) deps — typical for GitHub Pages sites. + - package-ecosystem: "bundler" + directory: "/" + schedule: + interval: "monthly" + assignees: + - "diogoribeiro7" + reviewers: + - "diogoribeiro7" + labels: + - "dependencies" + - "jekyll" + - "ruby" + # If you use the 'github-pages' meta-gem (recommended), you can limit updates to it: + # allow: + # - dependency-name: "github-pages" + # Optional: avoid major bumps on gems + # ignore: + # - dependency-name: "*" + # update-types: ["version-update:semver-major"] + # commit-message: + # prefix: "deps(bundler)" + + # GitHub Actions + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "monthly" + assignees: + - "diogoribeiro7" + reviewers: + - "diogoribeiro7" + labels: + - "dependencies" + - "github-actions" + # commit-message: + # prefix: "deps(actions)" + diff --git a/.github/workflows/jekyll.yml b/.github/workflows/jekyll.yml index 8b3a7b1..7715046 100644 --- a/.github/workflows/jekyll.yml +++ b/.github/workflows/jekyll.yml @@ -32,7 +32,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 - name: Setup Ruby uses: ruby/setup-ruby@v1 with: @@ -49,7 +49,7 @@ jobs: JEKYLL_ENV: production - name: Upload artifact # Automatically uploads an artifact from the './_site' directory by default - uses: actions/upload-pages-artifact@v3 + uses: actions/upload-pages-artifact@v4 # Deployment job deploy: diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index 3008204..a9e7fa9 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -9,9 +9,9 @@ jobs: test: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v6 with: python-version: '3.x' - name: Install dependencies diff --git a/.github/workflows/republish.yml b/.github/workflows/republish.yml index 15774e3..b8a2254 100644 --- a/.github/workflows/republish.yml +++ b/.github/workflows/republish.yml @@ -22,7 +22,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 - name: Setup Ruby uses: ruby/setup-ruby@v1 with: @@ -39,7 +39,7 @@ jobs: JEKYLL_ENV: production - name: Upload artifact # Automatically uploads an artifact from the './_site' directory by default - uses: actions/upload-pages-artifact@v3 + uses: actions/upload-pages-artifact@v4 # Deployment job deploy: diff --git a/.github/workflows/todo.yml b/.github/workflows/todo.yml index eb4cb10..14cf362 100644 --- a/.github/workflows/todo.yml +++ b/.github/workflows/todo.yml @@ -4,29 +4,80 @@ on: workflow_dispatch: inputs: importAll: - default: false - required: false + description: Import ALL TODOs from the checked-out ref (use with care) type: boolean - description: Enable, if you want to import all TODOs. Runs on checked out branch! Only use if you're sure what you are doing. + required: false + default: false push: - branches: - - master + # Use your default branch. Avoid multiple branches to prevent self-referencing on merges (per action docs). + branches: [ main ] + # Optional: run only when source files change, not docs/CI files. + paths: + - '**/*.ts' + - '**/*.tsx' + - '**/*.js' + - '**/*.jsx' + - '**/*.py' + - '**/*.rs' + - '**/*.go' + - '**/*.java' + - '**/*.cs' + - '**/*.rb' + - '**/*.php' + - '**/*.sh' + - '!**/*.md' + - '!.github/**' permissions: + contents: read issues: write repository-projects: read - contents: read + +concurrency: + group: todo-issue-${{ github.ref }} + cancel-in-progress: true jobs: todos: + name: Convert TODOs to issues runs-on: ubuntu-latest + timeout-minutes: 10 + if: ${{ !github.event.repository.fork }} # don't run on forks steps: - - uses: actions/checkout@v4 + # Pin to a release or a commit SHA for supply-chain safety. + # v5 example (or replace with a specific commit SHA): + - name: Checkout + uses: actions/checkout@v5 + with: + # If you plan to run "import all" against history, set fetch-depth: 0 + fetch-depth: 1 - name: Run Issue Bot - uses: juulsn/todo-issue@main - with: - excludePattern: '^(node_modules/)' + # Pin to the latest release tag instead of @main + uses: juulsn/todo-issue@v1.1.4 env: - GITHUB_TOKEN: ${{ secrets.PERSONAL_GITHUB_TOKEN }} # Replace with your PAT secret + # Use the built-in token; no PAT required. + # Either works; I prefer github.token so you don't need a secret entry. + GITHUB_TOKEN: ${{ github.token }} + with: + # Keep the regex tight; add common big folders/build artifacts to skip. + excludePattern: >- + ^( + node_modules/| + dist/| + build/| + .next/| + out/| + coverage/| + .venv/| + venv/| + target/| + vendor/ + ) + # Optional tweaks (uncomment if you want them) + keywords: '["TODO","FIXME"]' + label: '["todo"]' + autoAssign: false + caseSensitive: false + diff --git a/Gemfile.lock b/Gemfile.lock index b5fd5f0..2865023 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -3,21 +3,21 @@ GEM specs: addressable (2.8.7) public_suffix (>= 2.0.2, < 7.0) - base64 (0.2.0) - bigdecimal (3.1.9) + base64 (0.3.0) + bigdecimal (3.3.1) colorator (1.1.0) commonmarker (0.23.11) concurrent-ruby (1.3.5) - csv (3.3.4) + csv (3.3.5) em-websocket (0.5.3) eventmachine (>= 0.12.9) http_parser.rb (~> 0) eventmachine (1.2.7) - faraday (2.13.1) + faraday (2.14.0) faraday-net_http (>= 2.0, < 3.5) json logger - faraday-net_http (3.4.0) + faraday-net_http (3.4.1) net-http (>= 0.5.0) ffi (1.17.2) ffi (1.17.2-aarch64-linux-gnu) @@ -32,25 +32,34 @@ GEM ffi (1.17.2-x86_64-linux-gnu) ffi (1.17.2-x86_64-linux-musl) forwardable-extended (2.6.0) - google-protobuf (4.30.2) + google-protobuf (4.33.0) bigdecimal rake (>= 13) - google-protobuf (4.30.2-aarch64-linux) + google-protobuf (4.33.0-aarch64-linux-gnu) bigdecimal rake (>= 13) - google-protobuf (4.30.2-arm64-darwin) + google-protobuf (4.33.0-aarch64-linux-musl) bigdecimal rake (>= 13) - google-protobuf (4.30.2-x64-mingw-ucrt) + google-protobuf (4.33.0-arm64-darwin) bigdecimal rake (>= 13) - google-protobuf (4.30.2-x86-linux) + google-protobuf (4.33.0-x64-mingw-ucrt) bigdecimal rake (>= 13) - google-protobuf (4.30.2-x86_64-darwin) + google-protobuf (4.33.0-x86-linux-gnu) bigdecimal rake (>= 13) - google-protobuf (4.30.2-x86_64-linux) + google-protobuf (4.33.0-x86-linux-musl) + bigdecimal + rake (>= 13) + google-protobuf (4.33.0-x86_64-darwin) + bigdecimal + rake (>= 13) + google-protobuf (4.33.0-x86_64-linux-gnu) + bigdecimal + rake (>= 13) + google-protobuf (4.33.0-x86_64-linux-musl) bigdecimal rake (>= 13) http_parser.rb (0.8.0) @@ -99,7 +108,7 @@ GEM jekyll (>= 3.7, < 5.0) jekyll-watch (2.2.1) listen (~> 3.0) - json (2.12.0) + json (2.15.1) kramdown (2.5.1) rexml (>= 3.3.9) kramdown-parser-gfm (1.1.0) @@ -112,7 +121,7 @@ GEM rb-inotify (~> 0.9, >= 0.9.10) logger (1.7.0) mercenary (0.3.6) - minimal-mistakes-jekyll (4.27.1) + minimal-mistakes-jekyll (4.27.3) jekyll (>= 3.7, < 5.0) jekyll-feed (~> 0.1) jekyll-gist (~> 1.5) @@ -141,48 +150,48 @@ GEM pathutil (0.16.2) forwardable-extended (~> 2.6) public_suffix (6.0.2) - rake (13.2.1) + rake (13.3.0) rb-fsevent (0.11.2) rb-inotify (0.11.1) ffi (~> 1.0) redcarpet (3.6.1) - rexml (3.4.2) - rouge (4.5.2) + rexml (3.4.4) + rouge (4.6.1) rubyzip (2.4.1) safe_yaml (1.0.5) - sass-embedded (1.88.0) - google-protobuf (~> 4.30) + sass-embedded (1.93.2) + google-protobuf (~> 4.31) rake (>= 13) - sass-embedded (1.88.0-aarch64-linux-android) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-aarch64-linux-gnu) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-aarch64-linux-musl) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-arm-linux-androideabi) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-arm-linux-gnueabihf) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-arm-linux-musleabihf) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-arm64-darwin) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-riscv64-linux-android) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-riscv64-linux-gnu) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-riscv64-linux-musl) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-x64-mingw-ucrt) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-x86_64-darwin) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-x86_64-linux-android) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-x86_64-linux-gnu) - google-protobuf (~> 4.30) - sass-embedded (1.88.0-x86_64-linux-musl) - google-protobuf (~> 4.30) + sass-embedded (1.93.2-aarch64-linux-android) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-aarch64-linux-gnu) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-aarch64-linux-musl) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-arm-linux-androideabi) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-arm-linux-gnueabihf) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-arm-linux-musleabihf) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-arm64-darwin) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-riscv64-linux-android) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-riscv64-linux-gnu) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-riscv64-linux-musl) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-x64-mingw-ucrt) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-x86_64-darwin) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-x86_64-linux-android) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-x86_64-linux-gnu) + google-protobuf (~> 4.31) + sass-embedded (1.93.2-x86_64-linux-musl) + google-protobuf (~> 4.31) sawyer (0.9.2) addressable (>= 2.3.5) faraday (>= 0.17.3, < 3) @@ -190,7 +199,7 @@ GEM unicode-display_width (>= 1.1.1, < 3) titlecase (0.1.1) unicode-display_width (2.6.0) - uri (1.0.3) + uri (1.0.4) webrick (1.9.1) PLATFORMS diff --git a/package-lock.json b/package-lock.json index d259216..b418eb9 100644 --- a/package-lock.json +++ b/package-lock.json @@ -11,10 +11,37 @@ "devDependencies": { "npm-run-all": "^4.1.5", "onchange": "^7.1.0", + "stylelint": "^16.25.0", + 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a.language.name.localeCompare(b.language.name)); + + const languagesHTML = ` +
+
Languages
+ ${languages + .map( + (translation) => ` +
+ ${translation.language.code} +
+ `, + ) + .join("\n")} +
+ `; + return languagesHTML; + } + + function renderVersions(config) { + if (!config.versions.active.length) { + return ""; + } + const versionsHTML = ` +
+
Versions
+ ${config.versions.active + .map( + (version) => ` +
+ ${version.slug} +
+ `, + ) + .join("\n")} +
+ `; + return versionsHTML; + } + + function renderDownloads(config) { + if (!Object.keys(config.versions.current.downloads).length) { + return ""; + } + const downloadsNameDisplay = { + pdf: "PDF", + epub: "Epub", + htmlzip: "HTML", + }; + + const downloadsHTML = ` +
+
Downloads
+ ${Object.entries(config.versions.current.downloads) + .map( + ([name, url]) => ` +
+ ${downloadsNameDisplay[name]} +
+ `, + ) + .join("\n")} +
+ `; + return downloadsHTML; + } + + document.addEventListener("readthedocs-addons-data-ready", function (event) { + const config = event.detail.data(); + + const flyout = ` +
+ + Read the Docs + v: ${config.versions.current.slug} + + +
+
+ ${renderLanguages(config)} + ${renderVersions(config)} + ${renderDownloads(config)} +
+
On Read the Docs
+
+ Project Home +
+
+ Builds +
+
+ Downloads +
+
+
+
Search
+
+
+ +
+
+
+
+ + Hosted by Read the Docs + +
+
+ `; + + // Inject the generated flyout into the body HTML element. + document.body.insertAdjacentHTML("beforeend", flyout); + + // Trigger the Read the Docs Addons Search modal when clicking on the "Search docs" input from inside the flyout. + document + .querySelector("#flyout-search-form") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); + }) +} + +if (themeLanguageSelector || themeVersionSelector) { + function onSelectorSwitch(event) { + const option = event.target.selectedIndex; + const item = event.target.options[option]; + window.location.href = item.dataset.url; + } + + document.addEventListener("readthedocs-addons-data-ready", function (event) { + const config = event.detail.data(); + + const versionSwitch = document.querySelector( + "div.switch-menus > div.version-switch", + ); + if (themeVersionSelector) { + let versions = config.versions.active; + if (config.versions.current.hidden || config.versions.current.type === "external") { + versions.unshift(config.versions.current); + } + const versionSelect = ` + + `; + + versionSwitch.innerHTML = versionSelect; + versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + + const languageSwitch = document.querySelector( + "div.switch-menus > div.language-switch", + ); + + if (themeLanguageSelector) { + if (config.projects.translations.length) { + // Add the current language to the options on the selector + let languages = config.projects.translations.concat( + config.projects.current, + ); + languages = languages.sort((a, b) => + a.language.name.localeCompare(b.language.name), + ); + + const languageSelect = ` + + `; + + languageSwitch.innerHTML = languageSelect; + languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + else { + languageSwitch.remove(); + } + } + }); +} + +document.addEventListener("readthedocs-addons-data-ready", function (event) { + // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav. + document + .querySelector("[role='search'] input") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); +}); \ No newline at end of file diff --git a/packages/gensurvpy/_static/searchtools.js b/packages/gensurvpy/_static/searchtools.js index 92da3f8..b08d58c 100644 --- a/packages/gensurvpy/_static/searchtools.js +++ b/packages/gensurvpy/_static/searchtools.js @@ -178,7 +178,7 @@ const Search = { htmlToText: (htmlString, anchor) => { const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - for (const removalQuery of [".headerlinks", "script", "style"]) { + for (const removalQuery of [".headerlink", "script", "style"]) { htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); } if (anchor) { @@ -328,13 +328,14 @@ const Search = { for (const [title, foundTitles] of Object.entries(allTitles)) { if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { for (const [file, id] of foundTitles) { - let score = Math.round(100 * queryLower.length / title.length) + const score = Math.round(Scorer.title * queryLower.length / title.length); + const boost = titles[file] === title ? 1 : 0; // add a boost for document titles normalResults.push([ docNames[file], titles[file] !== title ? `${titles[file]} > ${title}` : title, id !== null ? "#" + id : "", null, - score, + score + boost, filenames[file], ]); } diff --git a/packages/gensurvpy/_static/design-style.1e8bd061cd6da7fc9cf755528e8ffc24.min.css b/packages/gensurvpy/_static/sphinx-design.min.css similarity index 87% rename from packages/gensurvpy/_static/design-style.1e8bd061cd6da7fc9cf755528e8ffc24.min.css rename to packages/gensurvpy/_static/sphinx-design.min.css index eb19f69..860c36d 100644 --- a/packages/gensurvpy/_static/design-style.1e8bd061cd6da7fc9cf755528e8ffc24.min.css +++ b/packages/gensurvpy/_static/sphinx-design.min.css @@ -1 +1 @@ -.sd-bg-primary{background-color:var(--sd-color-primary) !important}.sd-bg-text-primary{color:var(--sd-color-primary-text) !important}button.sd-bg-primary:focus,button.sd-bg-primary:hover{background-color:var(--sd-color-primary-highlight) !important}a.sd-bg-primary:focus,a.sd-bg-primary:hover{background-color:var(--sd-color-primary-highlight) !important}.sd-bg-secondary{background-color:var(--sd-color-secondary) 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- 1.0.10 -
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"v0": 3, "v1": 3, "valid": 14, "weibul": 13, "when": 14, "your": 15, "zucchini": 2}}) \ No newline at end of file diff --git a/packages/gensurvpy/theory.html b/packages/gensurvpy/theory.html index de78888..587a4ea 100644 --- a/packages/gensurvpy/theory.html +++ b/packages/gensurvpy/theory.html @@ -1,28 +1,28 @@ + + - + - + 📘 Mathematical Foundations of gen_surv — gen_surv 1.0.10 documentation - - - - - - - + + + + + + - - - - - - - - + + + + + + + + + @@ -41,9 +41,6 @@ gen_surv -
- 1.0.10 -
diff --git a/packages/gensurvpy/troubleshooting.html b/packages/gensurvpy/troubleshooting.html index 048cf61..2caff29 100644 --- a/packages/gensurvpy/troubleshooting.html +++ b/packages/gensurvpy/troubleshooting.html @@ -1,28 +1,28 @@ + + - + - + Troubleshooting — gen_surv 1.0.10 documentation - - - - - - - + + + + + + - - - - - - - - + + + + + + + + + @@ -41,9 +41,6 @@ gen_surv -
- 1.0.10 -
diff --git a/packages/gensurvpy/tutorials/basic_usage.html b/packages/gensurvpy/tutorials/basic_usage.html index 35555b1..812ffa4 100644 --- a/packages/gensurvpy/tutorials/basic_usage.html +++ b/packages/gensurvpy/tutorials/basic_usage.html @@ -1,28 +1,28 @@ + + - + - + Basic Usage Tutorial — gen_surv 1.0.10 documentation - - - - - - - + + + + + + - - - - - - - - + + + + + + + + + @@ -41,9 +41,6 @@ gen_surv -
- 1.0.10 -
diff --git a/packages/gensurvpy/tutorials/index.html b/packages/gensurvpy/tutorials/index.html index 3a54599..257a87b 100644 --- a/packages/gensurvpy/tutorials/index.html +++ b/packages/gensurvpy/tutorials/index.html @@ -1,28 +1,28 @@ + + - + - + Tutorials — gen_surv 1.0.10 documentation - - - - - - - + + + + + + - - - - - - - - + + + + + + + + + @@ -41,9 +41,6 @@ gen_surv -
- 1.0.10 -
diff --git a/packages/gensurvpy/usage.html b/packages/gensurvpy/usage.html index 007144a..a182230 100644 --- a/packages/gensurvpy/usage.html +++ b/packages/gensurvpy/usage.html @@ -1,28 +1,28 @@ + + - + - + Getting Started — gen_surv 1.0.10 documentation - - - - - - - + + + + + + - - - - - - - - + + + + + + + + + @@ -39,9 +39,6 @@ gen_surv -
- 1.0.10 -
diff --git a/packages/myrpackage/articles/advanced.html b/packages/myrpackage/articles/advanced.html index 6de08a3..8188d01 100644 --- a/packages/myrpackage/articles/advanced.html +++ b/packages/myrpackage/articles/advanced.html @@ -62,7 +62,7 @@

Advanced Usage of myrpackage

Diogo Ribeiro

-

2025-08-29

+

2025-10-15

Source: vignettes/advanced.Rmd
advanced.Rmd
diff --git a/packages/myrpackage/articles/intro.html b/packages/myrpackage/articles/intro.html index 43919b9..51691f7 100644 --- a/packages/myrpackage/articles/intro.html +++ b/packages/myrpackage/articles/intro.html @@ -62,7 +62,7 @@

Getting Started with myrpackage

Diogo Ribeiro

-

2025-08-29

+

2025-10-15

Source: vignettes/intro.Rmd
intro.Rmd
diff --git a/packages/myrpackage/pkgdown.yml b/packages/myrpackage/pkgdown.yml index 47eaf75..0f07a3d 100644 --- a/packages/myrpackage/pkgdown.yml +++ b/packages/myrpackage/pkgdown.yml @@ -4,7 +4,7 @@ pkgdown_sha: ~ articles: advanced: advanced.html intro: intro.html -last_built: 2025-08-29T20:34Z +last_built: 2025-10-15T08:50Z urls: reference: https://diogoribeiro7.github.io/packages/myrpackage/reference article: https://diogoribeiro7.github.io/packages/myrpackage/articles