updated bursitis classification

Author: lschriml

src/ontology/doid-edit.owl

@@ -1116,6 +1116,7 @@ Declaration(Class(obo:DOID_0051054))
 Declaration(Class(obo:DOID_0051055))
 Declaration(Class(obo:DOID_0051056))
 Declaration(Class(obo:DOID_0051057))
+Declaration(Class(obo:DOID_0051058))
 Declaration(Class(obo:DOID_0060000))
 Declaration(Class(obo:DOID_0060001))
 Declaration(Class(obo:DOID_0060002))
@@ -28952,6 +28953,14 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0051057 "DOID:0051057")
 AnnotationAssertion(rdfs:label obo:DOID_0051057 "avoidant/restrictive food intake disorder")
 SubClassOf(obo:DOID_0051057 obo:DOID_8670)
 
+# Class: obo:DOID_0051058 (acute calcific periarthritis)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://radiopaedia.org/articles/acute-calcific-periarthritis?lang=us") obo:IAO_0000115 obo:DOID_0051058 "A periarthritis that is characterized by the juxta-articular deposition of calcium hydroxyapatite crystals and local inflammation.")
+AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0051058 "disease_ontology")
+AnnotationAssertion(oboInOwl:id obo:DOID_0051058 "DOID:0051058")
+AnnotationAssertion(rdfs:label obo:DOID_0051058 "acute calcific periarthritis")
+SubClassOf(obo:DOID_0051058 obo:DOID_2964)
+
 # Class: obo:DOID_0060000 (infective endocarditis)
 
 AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Endocarditis") Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Infective_endocarditis") obo:IAO_0000115 obo:DOID_0060000 "An endocarditis that is characterized by inflammation of the endocardium caused by infectious agents.")
@@ -62205,9 +62214,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.n
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080719 "GARD:9494")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080719 "MIM:605637")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080719 "ORDO:79091")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080719 "congenital myopathy 6 with ophthalmoplegia")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080719 "inclusion body myopathy 3")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080719 "proximal myopathy and ophthalmoplegia")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080719 "congenital myopathy 6 with ophthalmoplegia")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080719 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0080719 "DOID:0080719")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_0080719 doid:DO_rare_slim)
@@ -89861,8 +89870,8 @@ AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasD
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111268 "MIM:255160")
 AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0111268 "MSMB")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111268 "Myopathy, myosin storage, autosomal recessive")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111268 "congenital myopathy 7B")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111268 "autosomal recessive myosin storage congenital myopathy 7B")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111268 "congenital myopathy 7B")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0111268 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0111268 "DOID:0111268")
 AnnotationAssertion(rdfs:label obo:DOID_0111268 "autosomal recessive hyaline body myopathy")
@@ -89875,9 +89884,9 @@ AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasD
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111269 "MIM:608358")
 AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0111269 "MSMA")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111269 "Myopathy, myosin storage, autosomal dominant")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111269 "autosomal dominant myosin storage congenital myopathy 7A")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111269 "congenital myopathy 7A")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111269 "myopathy with lysis of type I myofibrils")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111269 "autosomal dominant myosin storage congenital myopathy 7A")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0111269 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0111269 "DOID:0111269")
 AnnotationAssertion(rdfs:label obo:DOID_0111269 "autosomal dominant hyaline body myopathy")
@@ -123060,16 +123069,17 @@ AnnotationAssertion(oboInOwl:id obo:DOID_12221 "DOID:12221")
 AnnotationAssertion(rdfs:label obo:DOID_12221 "obsolete Synovial, tendon or bursa disorder")
 AnnotationAssertion(owl:deprecated obo:DOID_12221 "true"^^xsd:boolean)
 
-# Class: obo:DOID_12223 (specific bursitis often of occupational origin)
+# Class: obo:DOID_12223 (obsolete specific bursitis often of occupational origin)
 
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12223 "ICD9CM:727.2")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12223 "SNOMEDCT_US_2023_03_01:42812006")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12223 "UMLS_CUI:C0158332")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12223 "Specific bursitides often of occupational origin")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_12223 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_12223 "DOID:12223")
-AnnotationAssertion(rdfs:label obo:DOID_12223 "specific bursitis often of occupational origin")
-SubClassOf(obo:DOID_12223 obo:DOID_2965)
+AnnotationAssertion(rdfs:comment obo:DOID_12223 "Not a disease")
+AnnotationAssertion(rdfs:label obo:DOID_12223 "obsolete specific bursitis often of occupational origin")
+AnnotationAssertion(owl:deprecated obo:DOID_12223 "true"^^xsd:boolean)
 
 # Class: obo:DOID_12224 (obsolete calcium deposits in tendon and bursa)
 
@@ -125545,6 +125555,7 @@ SubClassOf(obo:DOID_12580 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:IDO_0000
 
 # Class: obo:DOID_12581 (olecranon bursitis)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://my.clevelandclinic.org/health/diseases/22553-elbow-olecranon-bursitis") Annotation(oboInOwl:hasDbXref "url:https://www.physio-pedia.com/Olecranon_Bursitis") obo:IAO_0000115 obo:DOID_12581 "A bursitis that is characterized by an inflammation of the bursa, located at the tip of the elbow (olecranon process).")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12581 "ICD10CM:M70.2")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12581 "ICD9CM:726.33")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12581 "SNOMEDCT_US_2023_03_01:425940002")
@@ -125560,7 +125571,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_12581 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_12581 "DOID:12581")
 AnnotationAssertion(rdfs:label obo:DOID_12581 "olecranon bursitis")
 EquivalentClasses(obo:DOID_12581 ObjectIntersectionOf(obo:DOID_2965 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0006810)))
-SubClassOf(obo:DOID_12581 obo:DOID_204)
+SubClassOf(obo:DOID_12581 obo:DOID_2965)
 
 # Class: obo:DOID_12582 (obsolete enthesopathy of elbow)
 
@@ -127164,18 +127175,21 @@ AnnotationAssertion(oboInOwl:id obo:DOID_12854 "DOID:12854")
 AnnotationAssertion(rdfs:label obo:DOID_12854 "obsolete adhesions of drum head to stapes")
 AnnotationAssertion(owl:deprecated obo:DOID_12854 "true"^^xsd:boolean)
 
-# Class: obo:DOID_12857 (Achilles bursitis)
+# Class: obo:DOID_12857 (retrocalcaneal bursitis)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.mountsinai.org/health-library/diseases-conditions/bursitis-of-the-heel") Annotation(oboInOwl:hasDbXref "url:https://www.physio-pedia.com/Retrocalcaneal_Bursitis") obo:IAO_0000115 obo:DOID_12857 "A bursitis that is characterized by an inflammation of the bursa, a fluid-filled sac that cushions the Achilles tendon where it attaches to the heel bone (calcaneus).")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12857 "ICD10CM:M76.6")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12857 "SNOMEDCT_US_2023_03_01:202879008")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12857 "UMLS_CUI:C0149846")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "Achilles bursitis or tendinitis")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "Capped hock")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "Haglund's deformity")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "Haglund's disease")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "Achilles bursitis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12857 "bursitis of the heel")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_12857 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_12857 "DOID:12857")
-AnnotationAssertion(rdfs:label obo:DOID_12857 "Achilles bursitis")
+AnnotationAssertion(rdfs:label obo:DOID_12857 "retrocalcaneal bursitis")
 SubClassOf(obo:DOID_12857 obo:DOID_2965)
 
 # Class: obo:DOID_12858 (Huntington's disease)
@@ -131429,6 +131443,7 @@ SubClassOf(obo:DOID_13452 obo:DOID_11343)
 
 # Class: obo:DOID_13453 (gonococcal bursitis)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://gesund.bund.de/en/icd-code-search/m73-00") obo:IAO_0000115 obo:DOID_13453 "A bursitis that is characterized by an inflammation of a bursa  caused by the Neisseria gonorrhoeae bacteria, resulting from gonorrhea that has spread to other parts of the body.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13453 "ICD10CM:A54.49")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13453 "ICD9CM:098.52")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13453 "SNOMEDCT_US_2023_03_01:186928003")
@@ -131439,6 +131454,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_13453 doid:gram-negative_bacteria
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_13453 doid:sexually_transmitted_infectious_disease)
 AnnotationAssertion(rdfs:label obo:DOID_13453 "gonococcal bursitis")
 SubClassOf(obo:DOID_13453 obo:DOID_2965)
+SubClassOf(obo:DOID_13453 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_485))
 SubClassOf(obo:DOID_13453 ObjectSomeValuesFrom(obo:RO_0002451 obo:TRANS_0000007))
 
 # Class: obo:DOID_13454 (gonococcal synovitis)
@@ -154186,17 +154202,19 @@ SubClassOf(obo:DOID_2962 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
 
 # Class: obo:DOID_2964 (periarthritis)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://mjnaiduhospitals.com/periarthritis/") obo:IAO_0000115 obo:DOID_2964 "An arthritis that is characterized by inflammation of the tissues surrounding a joint. It is a common cause of joint pain and stiffness.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2964 "ICD10CM:M77.9")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2964 "MESH:D010489")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2964 "SNOMEDCT_US_2023_03_01:50921008")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2964 "UMLS_CUI:C0031037")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_2964 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_2964 "DOID:2964")
 AnnotationAssertion(rdfs:label obo:DOID_2964 "periarthritis")
-SubClassOf(obo:DOID_2964 obo:DOID_2965)
+SubClassOf(obo:DOID_2964 obo:DOID_848)
 
 # Class: obo:DOID_2965 (bursitis)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.mayoclinic.org/diseases-conditions/bursitis/symptoms-causes/syc-20353242") obo:IAO_0000115 obo:DOID_2965 "A connective tissue disease that is characterized by the inflammation of bursae, small, fluid-filled sacs that cushion the bones, tendons and muscles near your joints.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2965 "ICD10CM:M71.9")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2965 "MESH:D002062")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2965 "NCI:C94407")
@@ -154206,7 +154224,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_2965 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_2965 "DOID:2965")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_2965 doid:NCIthesaurus)
 AnnotationAssertion(rdfs:label obo:DOID_2965 "bursitis")
-SubClassOf(obo:DOID_2965 obo:DOID_381)
+SubClassOf(obo:DOID_2965 obo:DOID_65)
 
 # Class: obo:DOID_297 (pleomorphic adenoma carcinoma)