Skip to content

Commit 658fdcf

Browse files
committed
Reclassify hepatitis A-E under 'viral hepatitis'
Closes #1453
1 parent b788132 commit 658fdcf

File tree

1 file changed

+11
-11
lines changed

1 file changed

+11
-11
lines changed

src/ontology/doid-edit.owl

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -123806,7 +123806,7 @@ SubClassOf(obo:DOID_12546 obo:DOID_5782)
123806123806

123807123807
# Class: obo:DOID_12549 (hepatitis A)
123808123808

123809-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-a/") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK459290/") obo:IAO_0000115 obo:DOID_12549 "A viral infectious disease that results_in inflammation located_in liver, has_material_basis_in Hepatitis A virus (Hepatovirus ahepa), which is transmitted_by ingestion of contaminated food or water, or transmitted_by direct contact with an infected person. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom joint pain, and has_symptom jaundice.")
123809+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-a/") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK459290/") obo:IAO_0000115 obo:DOID_12549 "A viral hepatitis that results_in inflammation located_in liver, has_material_basis_in Hepatitis A virus (Hepatovirus ahepa), which is transmitted_by ingestion of contaminated food or water, or transmitted_by direct contact with an infected person. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom joint pain, and has_symptom jaundice.")
123810123810
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_12549 "DOID:12547")
123811123811
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12549 "MESH:D006506")
123812123812
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12549 "NCI:C3096")
@@ -123819,7 +123819,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_12549 "DOID:12549")
123819123819
AnnotationAssertion(oboInOwl:inSubset obo:DOID_12549 doid:DO_infectious_disease_slim)
123820123820
AnnotationAssertion(oboInOwl:inSubset obo:DOID_12549 doid:NCIthesaurus)
123821123821
AnnotationAssertion(rdfs:label obo:DOID_12549 "hepatitis A")
123822-
SubClassOf(obo:DOID_12549 obo:DOID_934)
123822+
SubClassOf(obo:DOID_12549 obo:DOID_1884)
123823123823
SubClassOf(obo:DOID_12549 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_12092))
123824123824
SubClassOf(obo:DOID_12549 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000064))
123825123825
SubClassOf(obo:DOID_12549 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000125))
@@ -142445,7 +142445,7 @@ SubClassOf(obo:DOID_1882 obo:DOID_1681)
142445142445

142446142446
# Class: obo:DOID_1883 (hepatitis C)
142447142447

142448-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/HCV/index.htm") Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/hcv/pdfs/hepcgeneralfactsheet.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-c/about/index.html") obo:IAO_0000115 obo:DOID_1883 "A viral infectious disease that results_in inflammation located_in liver, has_material_basis_in Hepacivirus hominis, which is transmitted_by blood from an infected person enters the body of an uninfected person. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom joint pain, and has_symptom jaundice.")
142448+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/HCV/index.htm") Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/hcv/pdfs/hepcgeneralfactsheet.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-c/about/index.html") obo:IAO_0000115 obo:DOID_1883 "A viral hepatitis that results_in inflammation located_in liver, has_material_basis_in Hepacivirus hominis, which is transmitted_by blood from an infected person enters the body of an uninfected person. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom joint pain, and has_symptom jaundice.")
142449142449
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1883 "DOID:12430")
142450142450
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1883 "DOID:12432")
142451142451
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1883 "DOID:2049")
@@ -142466,7 +142466,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_1883 "DOID:1883")
142466142466
AnnotationAssertion(oboInOwl:inSubset obo:DOID_1883 doid:DO_infectious_disease_slim)
142467142467
AnnotationAssertion(oboInOwl:inSubset obo:DOID_1883 doid:NCIthesaurus)
142468142468
AnnotationAssertion(rdfs:label obo:DOID_1883 "hepatitis C")
142469-
SubClassOf(obo:DOID_1883 obo:DOID_934)
142469+
SubClassOf(obo:DOID_1883 obo:DOID_1884)
142470142470
SubClassOf(obo:DOID_1883 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_3052230))
142471142471
SubClassOf(obo:DOID_1883 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000064))
142472142472
SubClassOf(obo:DOID_1883 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000125))
@@ -143907,7 +143907,7 @@ SubClassOf(obo:DOID_204 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000716))
143907143907

143908143908
# Class: obo:DOID_2043 (hepatitis B)
143909143909

143910-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-b/") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK555945/") obo:IAO_0000115 obo:DOID_2043 "A viral infectious disease that results_in inflammation located_in liver, has_material_basis_in Hepatitis B virus (Orthohepadnavirus hominoidei), which is transmitted_by sexual contact, blood transfusions, or fomites like needles or syringes. The infection has_symptom fever, fatigue, loss of appetite, nausea, vomiting, abdominal pain, clay-colored bowel movements, joint pain, and jaundice.")
143910+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-b/") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK555945/") obo:IAO_0000115 obo:DOID_2043 "A viral hepatitis that results_in inflammation located_in liver, has_material_basis_in Hepatitis B virus (Orthohepadnavirus hominoidei), which is transmitted_by sexual contact, blood transfusions, or fomites like needles or syringes. The infection has_symptom fever, fatigue, loss of appetite, nausea, vomiting, abdominal pain, clay-colored bowel movements, joint pain, and jaundice.")
143911143911
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2043 "DOID:12591")
143912143912
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2043 "DOID:12592")
143913143913
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2043 "DOID:2042")
@@ -143925,9 +143925,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_2043 doid:DO_infectious_disease_s
143925143925
AnnotationAssertion(oboInOwl:inSubset obo:DOID_2043 doid:NCIthesaurus)
143926143926
AnnotationAssertion(oboInOwl:inSubset obo:DOID_2043 doid:sexually_transmitted_infectious_disease)
143927143927
AnnotationAssertion(rdfs:label obo:DOID_2043 "hepatitis B")
143928-
SubClassOf(obo:DOID_2043 obo:DOID_934)
143928+
SubClassOf(obo:DOID_2043 obo:DOID_1884)
143929+
SubClassOf(obo:DOID_2043 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0002451 obo:TRANS_0000007) ObjectSomeValuesFrom(obo:RO_0002451 obo:TRANS_0000011) ObjectSomeValuesFrom(obo:RO_0002451 obo:TRANS_0000013)))
143929143930
SubClassOf(obo:DOID_2043 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_10407))
143930-
SubClassOf(obo:DOID_2043 ObjectSomeValuesFrom(obo:RO_0002451 ObjectUnionOf(obo:TRANS_0000007 obo:TRANS_0000011 obo:TRANS_0000013)))
143931143931
SubClassOf(obo:DOID_2043 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000064))
143932143932
SubClassOf(obo:DOID_2043 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000125))
143933143933
SubClassOf(obo:DOID_2043 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000309))
@@ -143952,7 +143952,7 @@ SubClassOf(obo:DOID_2044 obo:DOID_2237)
143952143952

143953143953
# Class: obo:DOID_2047 (hepatitis D)
143954143954

143955-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Hepatitis_D") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-d/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK470436/") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/hepatitis-d") obo:IAO_0000115 obo:DOID_2047 "A viral infectious disease that results_in inflammation located_in liver, has_material_basis_in Hepatitis delta virus, which is an incomplete virus that requires the helper function of Hepatitis B virus to replicate and only occurs among people who are infected with the Hepatitis B virus (Orthohepadnavirus hominoidei). The infection has_symptom fatigue, has_symptom lethargy, has_symptom anorexia, has_symptom nausea, has_symptom jaundice, has_symptom clay-colored stools, has_symptom dark urine, has_symptom changes in personality, has_symptom disturbances in sleep, has_symptom confusion, has_symptom abnormal behavior, has_symptom somnolence, and has_symptom coma. Hepatitis delta virus, also known as Hepatitis D virus, is not a single viral species but a group of viruses from the genus Deltavirus including Deltavirus italiense, Deltavirus japanense, Deltavirus peruense, Deltavirus taiwanense, Deltavirus togense, Deltavirus carense, Deltavirus cameroonense, Deltavirus senegalense.")
143955+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Hepatitis_D") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-d/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK470436/") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/hepatitis-d") obo:IAO_0000115 obo:DOID_2047 "A viral hepatitis that results_in inflammation located_in liver, has_material_basis_in Hepatitis delta virus, which is an incomplete virus that requires the helper function of Hepatitis B virus to replicate and only occurs among people who are infected with the Hepatitis B virus (Orthohepadnavirus hominoidei). The infection has_symptom fatigue, has_symptom lethargy, has_symptom anorexia, has_symptom nausea, has_symptom jaundice, has_symptom clay-colored stools, has_symptom dark urine, has_symptom changes in personality, has_symptom disturbances in sleep, has_symptom confusion, has_symptom abnormal behavior, has_symptom somnolence, and has_symptom coma. Hepatitis delta virus, also known as Hepatitis D virus, is not a single viral species but a group of viruses from the genus Deltavirus including Deltavirus italiense, Deltavirus japanense, Deltavirus peruense, Deltavirus taiwanense, Deltavirus togense, Deltavirus carense, Deltavirus cameroonense, Deltavirus senegalense.")
143956143956
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2047 "DOID:2046")
143957143957
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2047 "MESH:D003699")
143958143958
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2047 "SNOMEDCT_US_2023_03_01:424460009")
@@ -143962,7 +143962,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_2047 "disease_ontology")
143962143962
AnnotationAssertion(oboInOwl:id obo:DOID_2047 "DOID:2047")
143963143963
AnnotationAssertion(oboInOwl:inSubset obo:DOID_2047 doid:DO_infectious_disease_slim)
143964143964
AnnotationAssertion(rdfs:label obo:DOID_2047 "hepatitis D")
143965-
SubClassOf(obo:DOID_2047 obo:DOID_934)
143965+
SubClassOf(obo:DOID_2047 obo:DOID_1884)
143966143966
SubClassOf(obo:DOID_2047 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_10407) ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_39759)))
143967143967
SubClassOf(obo:DOID_2047 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000016))
143968143968
SubClassOf(obo:DOID_2047 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000024))
@@ -167414,7 +167414,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_4410 "true"^^xsd:boolean)
167414167414

167415167415
# Class: obo:DOID_4411 (hepatitis E)
167416167416

167417-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-e/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK532278/") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/hepatitis-e") obo:IAO_0000115 obo:DOID_4411 "A viral infectious disease that results_in inflammation located_in liver, has_material_basis_in Hepatitis E virus (Paslahepevirus balayani), which is transmitted_by ingestion of contaminated food. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom dark urine, has_symptom joint pain, and has_symptom jaundice.")
167417+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/hepatitis-e/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK532278/") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/hepatitis-e") obo:IAO_0000115 obo:DOID_4411 "A viral hepatitis that results_in inflammation located_in liver, has_material_basis_in Hepatitis E virus (Paslahepevirus balayani), which is transmitted_by ingestion of contaminated food. The infection has_symptom fever, has_symptom fatigue, has_symptom loss of appetite, has_symptom nausea, has_symptom vomiting, has_symptom abdominal pain, has_symptom clay-colored bowel movements, has_symptom dark urine, has_symptom joint pain, and has_symptom jaundice.")
167418167418
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_4411 "DOID:12431")
167419167419
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4411 "GARD:9541")
167420167420
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4411 "MESH:D016751")
@@ -167426,7 +167426,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_4411 doid:DO_infectious_disease_s
167426167426
AnnotationAssertion(oboInOwl:inSubset obo:DOID_4411 doid:DO_rare_slim)
167427167427
AnnotationAssertion(oboInOwl:inSubset obo:DOID_4411 doid:zoonotic_infectious_disease)
167428167428
AnnotationAssertion(rdfs:label obo:DOID_4411 "hepatitis E")
167429-
SubClassOf(obo:DOID_4411 obo:DOID_934)
167429+
SubClassOf(obo:DOID_4411 obo:DOID_1884)
167430167430
SubClassOf(obo:DOID_4411 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_1678143))
167431167431
SubClassOf(obo:DOID_4411 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000064))
167432167432
SubClassOf(obo:DOID_4411 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000125))

0 commit comments

Comments
 (0)