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Fix retinal occlusion logical axioms
PROBLEMS: - Incorrect self-referencing EQs on DOID:8483 & DOID:1727; also vasculature referenced was too specific - More specific UBERON term replaced in DOID:1729 axiom
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-5
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3 files changed

+18
-5
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src/ontology/doid-edit.owl

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -129380,6 +129380,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_13098 "DOID:13098")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_13098 doid:NCIthesaurus)
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AnnotationAssertion(rdfs:label obo:DOID_13098 "central retinal artery occlusion")
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SubClassOf(obo:DOID_13098 obo:DOID_8483)
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SubClassOf(obo:DOID_13098 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0001620))
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# Class: obo:DOID_13099 (Moyamoya disease)
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@@ -143212,7 +143213,6 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_1727 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_1727 "DOID:1727")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_1727 doid:NCIthesaurus)
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AnnotationAssertion(rdfs:label obo:DOID_1727 "retinal vein occlusion")
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EquivalentClasses(obo:DOID_1727 ObjectIntersectionOf(obo:DOID_1729 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0001673)))
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SubClassOf(obo:DOID_1727 obo:DOID_1729)
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# Class: obo:DOID_1729 (retinal vascular occlusion)
@@ -143228,7 +143228,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_1729 "DOID:1729")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_1729 doid:NCIthesaurus)
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AnnotationAssertion(rdfs:label obo:DOID_1729 "retinal vascular occlusion")
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SubClassOf(obo:DOID_1729 obo:DOID_341)
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SubClassOf(obo:DOID_1729 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0000966))
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SubClassOf(obo:DOID_1729 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0004864))
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# Class: obo:DOID_173 (eccrine sweat gland neoplasm)
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@@ -149777,6 +149777,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_2450 "DOID:2450")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_2450 doid:NCIthesaurus)
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AnnotationAssertion(rdfs:label obo:DOID_2450 "central retinal vein occlusion")
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SubClassOf(obo:DOID_2450 obo:DOID_1727)
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SubClassOf(obo:DOID_2450 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0001673))
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# Class: obo:DOID_2451 (protein S deficiency)
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@@ -201607,7 +201608,6 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_8483 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_8483 "DOID:8483")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_8483 doid:NCIthesaurus)
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AnnotationAssertion(rdfs:label obo:DOID_8483 "retinal artery occlusion")
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EquivalentClasses(obo:DOID_8483 ObjectIntersectionOf(obo:DOID_8483 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0001620)))
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SubClassOf(obo:DOID_8483 obo:DOID_1729)
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# Class: obo:DOID_8484 (maple bark strippers' lung)

src/ontology/imports/uberon_import.owl

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -8,7 +8,7 @@
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
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<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/doid/imports/uberon_import.owl">
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/doid/releases/2026-02-28/imports/uberon_import.owl"/>
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/doid/imports/uberon_import.owl"/>
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<rdfs:comment>Sourced from http://purl.obolibrary.org/obo/uberon/releases/2025-12-04/uberon.owl</rdfs:comment>
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</owl:Ontology>
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@@ -5806,6 +5806,18 @@
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<!-- http://purl.obolibrary.org/obo/UBERON_0004864 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004864">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002049"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002203"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036302"/>
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<oboInOwl:id>UBERON:0004864</oboInOwl:id>
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<rdfs:label>vasculature of retina</rdfs:label>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/UBERON_0004867 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004867">

src/ontology/imports/uberon_terms.txt

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -425,4 +425,5 @@ UBERON:0002257 # ventral horn of spinal cord
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UBERON:0002228 # rib
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UBERON:3000701 # intervertebral space
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UBERON:0001385 # tibialis anterior
428-
UBERON:0001027 # sensory nerve
428+
UBERON:0001027 # sensory nerve
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UBERON:0004864 # vasculature of retina

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