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Fix DO report errors & warnings
Mostly from human error in mappings. Fixes were also applied in review data.
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src/ontology/doid-edit.owl

Lines changed: 4 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -45184,7 +45184,7 @@ AnnotationAssertion(oboInOwl:created_by obo:DOID_0061251 "claudiasbj")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0061251 "MIM:621466")
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AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0061251 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_0061251 "DOID:0061251")
45187-
AnnotationAssertion(rdfs:label obo:DOID_0061251 "Charcot-Marie-Tooth disease type 2KK"@en)
45187+
AnnotationAssertion(rdfs:label obo:DOID_0061251 "Charcot-Marie-Tooth disease type 2KK")
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SubClassOf(obo:DOID_0061251 obo:DOID_0050539)
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SubClassOf(obo:DOID_0061251 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
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@@ -51969,14 +51969,12 @@ SubClassOf(obo:DOID_0070497 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_000014
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/24462369/") obo:IAO_0000115 obo:DOID_0070498 "A COX deficiency, benign infantile mitochondrial myopathy that has_material_basis_in homozygous mutation in the PET100 gene on chromosome 19p13.2.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070498 "MIM:619055")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070498 "UMLS_CUI:C5436694")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070498 "UMLS_CUI:C5436695")
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AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0070498 "MC4DN12")
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AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0070498 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_0070498 "DOID:0070498")
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AnnotationAssertion(rdfs:label obo:DOID_0070498 "mitochondrial complex IV deficiency nuclear type 12")
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AnnotationAssertion(skos:exactMatch obo:DOID_0070498 "MIM:619055")
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AnnotationAssertion(skos:exactMatch obo:DOID_0070498 "UMLS_CUI:C5436694")
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AnnotationAssertion(skos:exactMatch obo:DOID_0070498 "UMLS_CUI:C5436695")
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SubClassOf(obo:DOID_0070498 obo:DOID_0081377)
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SubClassOf(obo:DOID_0070498 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
@@ -65223,7 +65221,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080906 "disease_ontology"
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AnnotationAssertion(oboInOwl:id obo:DOID_0080906 "DOID:0080906")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_0080906 doid:DO_cancer_slim)
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AnnotationAssertion(rdfs:label obo:DOID_0080906 "CNS neuroblastoma with FOXR2 activation")
65226-
AnnotationAssertion(skos:broadMatch obo:DOID_0080906 "UMLS CUI: C0700095")
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AnnotationAssertion(skos:broadMatch obo:DOID_0080906 "UMLS_CUI:C0700095")
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AnnotationAssertion(skos:exactMatch obo:DOID_0080906 "NCI:C186547")
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SubClassOf(obo:DOID_0080906 obo:DOID_0080905)
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@@ -101544,7 +101542,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "MIM:615607")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "ORDO:169082")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "SNOMEDCT_US_2025_09_01:766879006")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "UMLS_CUI:C3810107")
101547-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "UMLS_CUI:C4707864")
101545+
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0111973 "UMLS_CUI:C4510864")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111973 "CD3-gamma deficiency")
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AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0111973 "IMD17")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0111973 "SCID-like immunodeficiency, T cell-partial, B cell-positive, NK cell-positive")
@@ -101554,7 +101552,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0111973 "DOID:0111973")
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AnnotationAssertion(rdfs:label obo:DOID_0111973 "immunodeficiency 17")
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AnnotationAssertion(skos:exactMatch obo:DOID_0111973 "ORDO:169082")
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AnnotationAssertion(skos:exactMatch obo:DOID_0111973 "UMLS_CUI:C3810107")
101557-
AnnotationAssertion(skos:exactMatch obo:DOID_0111973 "UMLS_CUI:C4707864")
101555+
AnnotationAssertion(skos:exactMatch obo:DOID_0111973 "UMLS_CUI:C4510864")
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SubClassOf(obo:DOID_0111973 obo:DOID_11200)
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SubClassOf(obo:DOID_0111973 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
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