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Add synonym of congenital myasthenic syndrome 18
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src/ontology/doid-edit.owl

Lines changed: 14 additions & 39 deletions
Original file line numberDiff line numberDiff line change
@@ -2812,7 +2812,6 @@ Declaration(Class(obo:DOID_0070631))
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Declaration(Class(obo:DOID_0070632))
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Declaration(Class(obo:DOID_0070633))
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Declaration(Class(obo:DOID_0070634))
2815-
Declaration(Class(obo:DOID_0070635))
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Declaration(Class(obo:DOID_0080000))
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Declaration(Class(obo:DOID_0080001))
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Declaration(Class(obo:DOID_0080005))
@@ -14482,7 +14481,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://purl.obolibrary.or
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AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000119 obo:iao.owl)
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AnnotationAssertion(rdfs:label obo:IAO_0000119 "definition source")
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14485-
# Annotation Property: obo:IAO_0000700 (has_ontology_root_term)
14484+
# Annotation Property: obo:IAO_0000700 (has ontology root term)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://purl.obolibrary.org/obo/IAO_0000700") obo:IAO_0000115 obo:IAO_0000700 "Has ontology root term.")
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AnnotationAssertion(rdfs:label obo:IAO_0000700 "has_ontology_root_term")
@@ -17950,22 +17949,15 @@ SubClassOf(obo:DOID_0050201 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000504
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SubClassOf(obo:DOID_0050201 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000731))
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SubClassOf(obo:DOID_0050201 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0019145))
1795217951

17953-
# Class: obo:DOID_0050202 (Lujo hemorrhagic fever)
17952+
# Class: obo:DOID_0050202 (lujo hemorrhagic fever)
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17955-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Lujo_virus") Annotation(oboInOwl:hasDbXref "url:https://pmc.ncbi.nlm.nih.gov/articles/PMC4230886/") Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/19478873/") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/lujo-fever/about/") obo:IAO_0000115 obo:DOID_0050202 "A viral infectious disease that results_in infection, has_material_basis_in Lujo virus (Mammarenavirus lujoense), which has_symptom bleeding.")
17956-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050202 "GARD:21410")
17957-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050202 "MESH:C000723471")
17958-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050202 "ORDO:319213")
17959-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050202 "SNOMEDCT_US_2025_05_01:716585008")
17960-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050202 "UMLS_CUI:C4274433")
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:http://www.ncbi.nlm.nih.gov/sites/entrez/19478873") obo:IAO_0000115 obo:DOID_0050202 "A viral infectious disease that results_in infection, has_material_basis_in Lujo virus, which has_symptom bleeding.")
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AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0050202 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_0050202 "DOID:0050202")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050202 doid:DO_infectious_disease_slim)
17964-
AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050202 doid:DO_rare_slim)
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050202 doid:zoonotic_infectious_disease)
17966-
AnnotationAssertion(rdfs:label obo:DOID_0050202 "Lujo hemorrhagic fever")
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AnnotationAssertion(rdfs:label obo:DOID_0050202 "lujo hemorrhagic fever")
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SubClassOf(obo:DOID_0050202 obo:DOID_934)
17968-
SubClassOf(obo:DOID_0050202 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_3052314))
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SubClassOf(obo:DOID_0050202 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000007))
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# Class: obo:DOID_0050203 (obsolete Cytomegalovirus hepatitis)
@@ -27937,7 +27929,7 @@ SubClassOf(obo:DOID_0050975 obo:DOID_1441)
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# Class: obo:DOID_0050976 (spinocerebellar ataxia type 27A)
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27940-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/32162847/") obo:IAO_0000115 obo:DOID_0050976 "An autosomal dominant cerebellar ataxia that is characterized by general cerebellar dysfunction manifest as gait disturbances, ataxia, tremor, dysarthria, and gaze-evoked nystagmus and has_material_basis_in heterozygous mutation in the FGF14 gene on chromosome 13q33. Some patients have heterozygous deletions of chromosome 13q33 affecting the FGF14 and ITGBL1 genes, which may thus be considered a contiguous gene deletion syndrome.")
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/32162847/") obo:IAO_0000115 obo:DOID_0050976 "An autosomal dominant cerebellar ataxia that is characterized by general cerebellar dysfunction manifest as gait disturbances, ataxia, tremor, dysarthria, and gaze-evoked nystagmus and has_material_basis_in heterozygous mutation in the FGF14 gene on chromosome 13q33.")
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AnnotationAssertion(oboInOwl:created_by obo:DOID_0050976 "lschriml")
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AnnotationAssertion(oboInOwl:creation_date obo:DOID_0050976 "2015-10-06T16:11:07Z")
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AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050976 "DOID:0111794")
@@ -36173,6 +36165,7 @@ AnnotationAssertion(rdfs:label obo:DOID_0060478 "Zika fever")
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AnnotationAssertion(skos:broadMatch obo:DOID_0060478 "ICD10CM:A92.8")
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AnnotationAssertion(skos:broadMatch obo:DOID_0060478 "ICD9CM:066.3")
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AnnotationAssertion(skos:exactMatch obo:DOID_0060478 "GARD:12894")
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AnnotationAssertion(skos:exactMatch obo:DOID_0060478 "ICD10CM:A92.8")
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AnnotationAssertion(skos:exactMatch obo:DOID_0060478 "ICD9CM:066.3")
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AnnotationAssertion(skos:exactMatch obo:DOID_0060478 "MESH:D000071243")
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AnnotationAssertion(skos:exactMatch obo:DOID_0060478 "NCI:C128423")
@@ -52847,18 +52840,6 @@ AnnotationAssertion(rdfs:label obo:DOID_0070634 "sitosterolemia 1")
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AnnotationAssertion(skos:exactMatch obo:DOID_0070634 "MIM:210250")
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SubClassOf(obo:DOID_0070634 obo:DOID_0090019)
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# Class: obo:DOID_0070635 (cardiovascular-kidney-metabolic syndrome)
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/37807924/") obo:IAO_0000115 obo:DOID_0070635 "A syndrome characterized byy multiorgan dysfunction and a high rate of adverse cardiovascular outcomes arising from the interconnection between cardiovascular disease, chronic kidney disease, and metabolic risk factors associated with diabetes and obesity.")
52853-
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0070635 "CKM syndrome")
52854-
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0070635 "CRM syndrome")
52855-
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0070635 "cardio-kidney-metabolic syndrome")
52856-
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0070635 "cardiovascular-renal-metabolic syndrome")
52857-
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0070635 "disease_ontology")
52858-
AnnotationAssertion(oboInOwl:id obo:DOID_0070635 "DOID:0070635")
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AnnotationAssertion(rdfs:label obo:DOID_0070635 "cardiovascular-kidney-metabolic syndrome")
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SubClassOf(obo:DOID_0070635 obo:DOID_225)
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# Class: obo:DOID_0080000 (muscular disease)
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/muscledisorders.html") obo:IAO_0000115 obo:DOID_0080000 "A musculoskeletal system disease that affects the muscles.")
@@ -55094,7 +55075,7 @@ SubClassOf(obo:DOID_0080179 obo:DOID_9470)
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# Class: obo:DOID_0080180 (Zika virus congenital syndrome)
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://pmc.ncbi.nlm.nih.gov/articles/PMC5823548/") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/zika/czs/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/zika-virus") obo:IAO_0000115 obo:DOID_0080180 "A syndrome that is characterized in neonates by microcephaly, craniofacial disproportion, spasticity, seizures, irritability and brainstem dysfunction including feeding difficulties, ocular abnormalities and findings on neuroimaging such as calcifications, cortical disorders and ventriculomegaly and has_material_basis_in the acquisition of Zika virus (Orthoflavivirus zikaense) infection in utero.")
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/zika/czs/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.who.int/news-room/fact-sheets/detail/zika-virus") obo:IAO_0000115 obo:DOID_0080180 "A syndrome that is characterized in neonates by microcephaly, craniofacial disproportion, spasticity, seizures, irritability and brainstem dysfunction including feeding difficulties, ocular abnormalities and findings on neuroimaging such as calcifications, cortical disorders and ventriculomegaly and has_material_basis_in the acquisition of Zika virus (Orthoflavivirus zikaense) infection in utero.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080180 "SNOMEDCT_US_2025_05_01:762725007")
5509955080
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080180 "UMLS_CUI:C4546023")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080180 "ZIKV congenital infection")
@@ -55105,8 +55086,8 @@ AnnotationAssertion(rdfs:label obo:DOID_0080180 "Zika virus congenital syndrome"
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AnnotationAssertion(skos:exactMatch obo:DOID_0080180 "UMLS_CUI:C4546023")
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AnnotationAssertion(skos:relatedMatch obo:DOID_0080180 "MESH:D000071243")
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SubClassOf(obo:DOID_0080180 obo:DOID_225)
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SubClassOf(obo:DOID_0080180 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0011460) ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0011461)))
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SubClassOf(obo:DOID_0080180 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_3048459))
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SubClassOf(obo:DOID_0080180 ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0030674))
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SubClassOf(obo:DOID_0080180 ObjectSomeValuesFrom(obo:RO_0004019 obo:HP_0001197))
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# Class: obo:DOID_0080181 (PHARC syndrome)
@@ -62370,19 +62351,11 @@ SubClassOf(obo:DOID_0080826 obo:DOID_0080809)
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# Class: obo:DOID_0080827 (human cytomegalovirus infection)
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62373-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(dc:type obo:ECO_0007646) Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/25205255/") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK459185/") obo:IAO_0000115 obo:DOID_0080827 "A viral infectious disease that has_material_basis_in Human betaherpesvirus 5 (Cytomegalovirus humanbeta5).")
62374-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "ICD10CM:B25")
62375-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "ICD9CM:078.5")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "MESH:D003586")
62377-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "NCI:C53649")
62378-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "SNOMEDCT_US_2025_05_01:28944009")
62379-
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080827 "UMLS_CUI:C0010823")
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/25205255/") obo:IAO_0000115 obo:DOID_0080827 "A viral infectious disease that has_material_basis_in Human betaherpesvirus 5.")
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AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080827 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_0080827 "DOID:0080827")
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_0080827 doid:DO_infectious_disease_slim)
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AnnotationAssertion(rdfs:label obo:DOID_0080827 "human cytomegalovirus infection")
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AnnotationAssertion(skos:narrowMatch obo:DOID_0080827 "ICD10CM:B25.9")
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EquivalentClasses(obo:DOID_0080827 ObjectIntersectionOf(obo:DOID_4 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_3050295)))
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SubClassOf(obo:DOID_0080827 obo:DOID_934)
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# Class: obo:DOID_0080828 (VEXAS syndrome)
@@ -80630,6 +80603,8 @@ SubClassOf(obo:DOID_0110682 ObjectSomeValuesFrom(obo:RO_0004019 obo:HP_0001197))
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25381298") obo:IAO_0000115 obo:DOID_0110683 "A congenital myasthenic syndrome characterized by autosomal dominant inheritance of presynaptic neuromuscular junction defects, early-onset muscle weakness, easy fatigability, delayed psychomotor development and ataxia that has_material_basis_in heterozygous mutation in the SNAP25 gene on chromosome 20p11.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0110683 "MIM:616330")
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AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0110683 "CMS18")
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AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003012) oboInOwl:hasExactSynonym obo:DOID_0110683 "DEE117")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0110683 "developmental and epileptic encephalopathy 117")
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AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0110683 "disease_ontology")
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AnnotationAssertion(oboInOwl:id obo:DOID_0110683 "DOID:0110683")
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AnnotationAssertion(rdfs:label obo:DOID_0110683 "congenital myasthenic syndrome 18")
@@ -115184,7 +115159,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_11259 "true"^^xsd:boolean)
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# Class: obo:DOID_11260 (rabies)
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AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Rabies") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/yellow-book/hcp/travel-associated-infections-diseases/rabies.html") obo:IAO_0000115 obo:DOID_11260 "A viral infectious disease that results in inflammation located in brain or located in spinal cord, has_material_basis_in viruses in the genus Lyssavirus, which are transmitted by bite of an infected animal, or transmitted by contact of mucous membranes with saliva of an infected animal. The infection has symptom fever, has symptom headache, has symptom prickling or itching sensation at the site of bite, has symptom anxiety, has symptom confusion, has symptom agitation, has symptom delirium, has symptom difficulty swallowing, has symptom hydrophobia, and has symptom paralysis. Most human cases of rabies are caused by the Rabies virus (Lyssavirus rabies) transmitted from dogs.")
115162+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Rabies") Annotation(oboInOwl:hasDbXref "url:https://wwwnc.cdc.gov/travel/yellowbook/2020/travel-related-infectious-diseases/rabies") obo:IAO_0000115 obo:DOID_11260 "A viral infectious disease that results in inflammation located in brain or located in spinal cord, has_material_basis_in Rabies virus, which is transmitted by bite of an infected animal, or transmitted by contact of mucous membranes with saliva of an infected animal. The infection has symptom fever, has symptom headache, has symptom prickling or itching sensation at the site of bite, has symptom anxiety, has symptom confusion, has symptom agitation, has symptom delirium, has symptom difficulty swallowing, has symptom hydrophobia, and has symptom paralysis.")
115188115163
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11260 "GARD:7516")
115189115164
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11260 "ICD10CM:A82")
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AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11260 "ICD9CM:071")
@@ -115201,7 +115176,6 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_11260 doid:NCIthesaurus)
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AnnotationAssertion(oboInOwl:inSubset obo:DOID_11260 doid:zoonotic_infectious_disease)
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AnnotationAssertion(rdfs:label obo:DOID_11260 "rabies")
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SubClassOf(obo:DOID_11260 obo:DOID_934)
115204-
SubClassOf(obo:DOID_11260 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_11286))
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SubClassOf(obo:DOID_11260 ObjectSomeValuesFrom(obo:RO_0002451 obo:TRANS_0000007))
115206115180
SubClassOf(obo:DOID_11260 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000016))
115207115181
SubClassOf(obo:DOID_11260 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000021))
@@ -201777,7 +201751,8 @@ AnnotationAssertion(owl:deprecated obo:DOID_8656 "true"^^xsd:boolean)
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# Class: obo:DOID_8659 (chickenpox)
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201780-
AnnotationAssertion(Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/chickenpox/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK448191/") Annotation(oboInOwl:hasDbXref "url:https://medlineplus.gov/chickenpox.html") obo:IAO_0000115 obo:DOID_8659 "A viral infectious disease that results_in infection located_in skin, has_material_basis_in Human herpesvirus 3 (Varicellovirus humanalpha3), which is transmitted_by direct contact with secretions from the rash, or transmitted_by droplet spread of respiratory secretions. The infection has_symptom anorexia, has_symptom myalgia, has_symptom nausea, has_symptom fever, has_symptom headache, has_symptom sore throat, and has_symptom blisters.")
201754+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/chickenpox.html") Annotation(oboInOwl:hasDbXref "url:https://www.cdc.gov/chickenpox/about/index.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK448191/") obo:IAO_0000115 obo:DOID_8659 "A viral infectious disease that results_in infection located_in skin, has_material_basis_in Human herpesvirus 3 (Varicellovirus humanalpha3), which is transmitted_by direct contact with secretions from the rash, or transmitted_by droplet spread of respiratory secretions. The infection has_symptom anorexia, has_symptom myalgia, has_symptom nausea, has_symptom fever, has_symptom headache, has_symptom sore throat, and has_symptom blisters.")
201755+
AnnotationAssertion(Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:https://medlineplus.gov/chickenpox.html") obo:IAO_0000115 obo:DOID_8659 "A viral infectious disease that results_in infection located_in skin, has_material_basis_in Human herpesvirus 3 (Varicellovirus humanalpha3), which is transmitted_by direct contact with secretions from the rash, or transmitted_by droplet spread of respiratory secretions. The infection has_symptom anorexia, has_symptom myalgia, has_symptom nausea, has_symptom fever, has_symptom headache, has_symptom sore throat, and has_symptom blisters.")
201781201756
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_8659 "DOID:8658")
201782201757
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_8659 "DOID:8693")
201783201758
AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_8659 "DOID:9243")

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