review and updated autoimmune diseases

Author: lschriml

src/ontology/doid-edit.owl

@@ -18170,7 +18170,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0050214 "DOID:0050214")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050214 doid:NCIthesaurus)
 AnnotationAssertion(rdfs:label obo:DOID_0050214 "Lambert-Eaton myasthenic syndrome")
 SubClassOf(obo:DOID_0050214 obo:DOID_439)
-SubClassOf(obo:DOID_0050214 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0010701))
+SubClassOf(obo:DOID_0050214 ObjectIntersectionOf(obo:DOID_417 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0002204)))
 
 # Class: obo:DOID_0050215 (obsolete Staphylococcus gastroenteritis)
 
@@ -53631,21 +53631,21 @@ SubClassOf(obo:DOID_0070653 obo:DOID_0050888)
 
 AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://pmc.ncbi.nlm.nih.gov/articles/PMC1226055/") Annotation(oboInOwl:hasDbXref "url:https://pmc.ncbi.nlm.nih.gov/articles/PMC4076431/") obo:IAO_0000115 obo:DOID_0070654 "A lipid metabolism disorder characterized by multiple congenital anomalies, developmental delay, intellectual disability, and elevated levels of the cholesterol precursor desmosterol that has_material_basis_in homozygous or compound heterozygous mutation in the DHCR24 gene on chromosome 1p32.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "GARD:10283")
+AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "ICD10CM:Q87.89")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "MESH:C566555")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "MIM:602398")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "ORDO:35107")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "SNOMEDCT_US_2025_05_01:709490002")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "UMLS_CUI:C1865596")
-AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0070654 "ICD10CM:Q87.89")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0070654 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0070654 "DOID:0070654")
 AnnotationAssertion(rdfs:label obo:DOID_0070654 "desmosterolosis")
 AnnotationAssertion(skos:broadMatch obo:DOID_0070654 "ICD10CM:Q87.89")
 AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "GARD:10283")
 AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "MESH:C566555")
-AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "UMLS_CUI:C1865596")
 AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "MIM:602398")
 AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "ORDO:35107")
+AnnotationAssertion(skos:exactMatch obo:DOID_0070654 "UMLS_CUI:C1865596")
 SubClassOf(obo:DOID_0070654 obo:DOID_0050888)
 SubClassOf(obo:DOID_0070654 obo:DOID_3146)
 SubClassOf(obo:DOID_0070654 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
@@ -62269,14 +62269,13 @@ SubClassOf(obo:DOID_0080739 obo:DOID_13359)
 
 # Class: obo:DOID_0080740 (Libman-Sacks endocarditis)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/25807885/") Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/30422459/") obo:IAO_0000115 obo:DOID_0080740 "An endocarditis that is characterized by Libman-Sacks vegetations, is common in patients with systemic lupus erythematosus and is commonly complicated with embolic cerebrovascular disease.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/25807885/") Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/30422459/") obo:IAO_0000115 obo:DOID_0080740 "A nonbacterial thrombotic endocarditis that is characterized by Libman-Sacks vegetations, is common in patients with systemic lupus erythematosus and is commonly complicated with embolic cerebrovascular disease.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080740 "ICD10CM:M32.11")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080740 "Libmann–Sachs, Endocarditis in systemic lupus erythematosus")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080740 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0080740 "DOID:0080740")
 AnnotationAssertion(rdfs:label obo:DOID_0080740 "Libman-Sacks endocarditis")
-SubClassOf(obo:DOID_0080740 obo:DOID_10314)
-SubClassOf(obo:DOID_0080740 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0010701))
+SubClassOf(obo:DOID_0080740 obo:DOID_0060068)
 
 # Class: obo:DOID_0080741 (limbic encephalitis)
 
@@ -129521,7 +129520,7 @@ SubClassOf(obo:DOID_13240 obo:DOID_214)
 
 # Class: obo:DOID_13241 (Behcet's disease)
 
-AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Beh%C3%A7et%27s_disease") Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/behcetssyndrome.html") obo:IAO_0000115 obo:DOID_13241 "A vasculitis that is characterized by an autoimmune mediated inflammation of the blood vessels throughout the body leading to ulcerations on the mouth and sometimes the genitals, notorious for causing hypopyon uveitis.")
+AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007644) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Beh%C3%A7et%27s_disease") Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/behcetssyndrome.html") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK470257/") obo:IAO_0000115 obo:DOID_13241 "An autoimmune disease that is characterized by mucocutaneous manifestations, including recurrent oral and genital ulcerations, ocular manifestations, especially chronic relapsing uveitis, and systemic vasculitis involving arteries and veins of all sizes.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13241 "EFO:0003780")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13241 "GARD:848")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_13241 "ICD10CM:M35.2")