Stop tracking plugins in the bidsmapper that may not actually be used #25
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| name: Pytests | ||
| on: | ||
| push: | ||
| paths-ignore: &ignore | ||
| - 'docs/**' | ||
| - '.github/**' | ||
| - '**.rst' | ||
| - '**.md' | ||
| - 'apptainer.def' | ||
| - 'Dockerfile' | ||
| - '.readthedocs.yaml' | ||
| pull_request: | ||
| paths-ignore: *ignore | ||
| jobs: | ||
| tests: | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| python-version: ['3.9', '3.13'] | ||
| os: [ubuntu-latest, macos-latest, windows-latest] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| pip install --upgrade pip | ||
| pip install .[all] pytest | ||
| - name: Install dcm2niix posix | ||
| if: runner.os != 'Windows' | ||
| run: | | ||
| if [ "$RUNNER_OS" == "Linux" ]; then | ||
| sudo apt update && sudo apt install qt6-base-dev | ||
| mkdir dcm2niix_install/ && cd dcm2niix_install/ | ||
| curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_lnx.zip | ||
| unzip dcm2niix*.zip | ||
| echo "${{ github.workspace }}/dcm2niix_install/" >> $GITHUB_PATH | ||
| elif [ "$RUNNER_OS" == "macOS" ]; then | ||
| brew install dcm2niix | ||
| fi | ||
| - name: Install dcm2niix windows | ||
| if: runner.os == 'Windows' | ||
| run: | | ||
| curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_win.zip | ||
| Expand-Archive dcm2niix_win.zip | ||
| Add-Content $env:GITHUB_PATH "${{ github.workspace }}/dcm2niix_win/" | ||
| - name: Tests with pytest | ||
| run: | | ||
| pytest tests | ||
| env: | ||
| DUECREDIT_ENABLE: no | ||
