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bidscoiner/bidscoiner.py

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@@ -311,7 +311,7 @@ def bidscoiner(rawfolder, bidsfolder, subjects=[], force=False, participants=Fal
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parser.add_argument('bidsfolder', help='The destination folder with the bids data structure')
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parser.add_argument('-s','--subjects', help='Space seperated list of selected sub-# names / folders to be processed. Otherwise all subjects in the rawfolder will be selected', nargs='*')
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parser.add_argument('-f','--force', help='If this flag is given subjects will be processed, regardless of existing folders in the bidsfolder. Otherwise existing folders will be skipped', action='store_true')
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parser.add_argument('-p','--participants', help='If this flag is given those subjects that are in particpants.tsv will not be processed (also when force=true). By default the participants.tsv table is ignored', action='store_true')
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parser.add_argument('-p','--participants', help='If this flag is given those subjects that are in particpants.tsv will not be processed (also when the --force flag is given). Otherwise the participants.tsv table is ignored', action='store_true')
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parser.add_argument('-b','--bidsmap', help='The bidsmap yaml-file with the study heuristics. If there is no "/" in the name, then the path is taken to be bidsfolder/code/. Default: bidsmap.yaml, ', default='bidsmap.yaml')
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args = parser.parse_args()
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requirements.txt

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setuptools
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# setuptools
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# python=3
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pandas
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pydicom>=1.0.2
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ruamel_yaml>=0.15.35

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